Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1093 ATGGGGGCTGGGGAAGATACCACACCTACTAAGCCTTCCAAACCAACTTCTTCAGCTCAGGAAATGCCAACGACGCCCTCATATCCTGAGTGGTCGAGCTCTATGCAGGCTTATTATGGTCCTGGAGCTACACCACCTCCCTTTTTTGCTCCCTCTGTTGCTTCTCCAACTCCCCATCCATATCTGTGGGGAAGCCAGCATCCTTTAATTCCTCCATATGGAACACCAGTTCCATACTCAGCCTTATATCCTCCAGGAGGTGTTTATGCACATCCTAATTTGGCCACGGCTCCAAGTGCAGCACATTTAAACCCTGAGTTGGAAGGGAAAGGCCCTGAGGGAAAAGACAAGGCTTCAGCAAAGAAATCTAAAGGAACATCAGGAAATACTGTTAAGGGTGGCGAGAGTGGAAAGGCAGCTTCAGGCTCAGGAAATGATGGTGCCTCACCAAGTGCTGAAAGTGGAAGTGAGGGTTCATCAGATGCAAGTGATGAGAATACTAACCAACAAGAATTTGCTTCTAGTAAGAAGGGAAGTTTCAATCAGATGCTTGCTGATGCCAATGCACAGAATAACATCTCTGGAACAAGTGTTCAGGCTTCAGTTCCTGGGAAGCCTGTAATATCTATGCCTGCAACTAATCTAAATATTGGGATGGACTTATGGAGTGCATCTCCTGGGGGCTCTGGAGCTACAAAACTGAGACCAAATCCATCTGGCATCTCATCTTCTGTTGCTCCAGCAGCAATGGTTGGGCGTGAAGGCGTTATGCCCGACCAGTGGATTCAAGATGAACGTGAACTCAAAAGACAAAAGAGGAAACAATCTAACAGGGAGTCAGCTAGGAGGTCGAGATTACGGAAGCAGGTATTAATGTACTTTGTGTTCTTTTGTTTGAGCTAG 903 0.4684 MGAGEDTTPTKPSKPTSSAQEMPTTPSYPEWSSSMQAYYGPGATPPPFFAPSVASPTPHPYLWGSQHPLIPPYGTPVPYSALYPPGGVYAHPNLATAPSAAHLNPELEGKGPEGKDKASAKKSKGTSGNTVKGGESGKAASGSGNDGASPSAESGSEGSSDASDENTNQQEFASSKKGSFNQMLADANAQNNISGTSVQASVPGKPVISMPATNLNIGMDLWSASPGGSGATKLRPNPSGISSSVAPAAMVGREGVMPDQWIQDERELKRQKRKQSNRESARRSRLRKQVLMYFVFFCLS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1093 300 MobiDBLite consensus disorder prediction 1 85 - -
Vvi4g1093 300 MobiDBLite consensus disorder prediction 123 177 - -
Vvi4g1093 300 MobiDBLite consensus disorder prediction 103 177 - -
Vvi4g1093 300 MobiDBLite consensus disorder prediction 9 39 - -
Vvi4g1093 300 Pfam bZIP transcription factor 265 289 IPR004827 GO:0003700|GO:0006355
Vvi4g1093 300 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Vvi4g1093 300 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 290 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi4g1093 300 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 272 287 IPR004827 GO:0003700|GO:0006355
Vvi4g1093 300 MobiDBLite consensus disorder prediction 259 274 - -
Vvi4g1093 300 MobiDBLite consensus disorder prediction 257 282 - -
Vvi4g1093 300 MobiDBLite consensus disorder prediction 108 122 - -
Vvi4g1093 300 CDD bZIP_plant_GBF1 270 292 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1093 Vvi-Chr4 17837232 17839916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1093 1 290 bZIP Transcription Factor Family AT4G36730 55.172 1.08e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi4g1093 MFMR 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1093 K09060 - vvi:100258205 532.717