Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1092 ATGCCTGTTGCCATAAAGATGATACAACCGAACAAAACGTCAGCTGTGAGTCCTGATCGAAAGGAAAAATTTCAGAGGGAGGTTACAATACTATCTAGGGTTAAACATGAAAATATTGTGAAGTTTATTGGGGCATCTATAGAACCGACTATGATGATAATTACAGAGCTCATGAAAGGTGGTACACTTCAGCAGTACTTGTGGAGCATTCGTCCAAATTCTCCAGATCTGAAACTGTCTTTAAGTTTTGCTTTGGATATTTCTCGGGTTATGGAATACTTGCATGCAAACGGCATCATTCATCGTGACTTGAAACCTAGCAATCTGCTCCTCACAGAGGACAAGAAGCAAATTAAGGTTTGTGACTTTGGTCTAGCAAGAGAGGAGACAGCTGGTGATATGACGACTGAGGCTGGTACTTATCGGTGGATGGCTCCTGAGTTGTTCAGCACAGTTCCACTTCCAAGGGGTGCAAAGATACACTATGATCACAAGGTGGATGTGTACAGCTTCGCCATTATTCTGTGGGAGTTGCTAACAAACAGAACTCCATTCAAGGGGGTACAAAGCATACTAATAGCATATGCTGCAGCTAATAGAACTTGTACTACAACACCAAAAGGAGACAAACCCTAG 636 0.423 MPVAIKMIQPNKTSAVSPDRKEKFQREVTILSRVKHENIVKFIGASIEPTMMIITELMKGGTLQQYLWSIRPNSPDLKLSLSFALDISRVMEYLHANGIIHRDLKPSNLLLTEDKKQIKVCDFGLAREETAGDMTTEAGTYRWMAPELFSTVPLPRGAKIHYDHKVDVYSFAIILWELLTNRTPFKGVQSILIAYAAANRTCTTTPKGDKP* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1092 211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Vvi4g1092 211 SUPERFAMILY Protein kinase-like (PK-like) 3 202 IPR011009 -
Vvi4g1092 211 CDD STKc_MAP3K-like 2 200 - -
Vvi4g1092 211 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1092 211 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 2 197 - -
Vvi4g1092 211 Gene3D Transferase(Phosphotransferase) domain 1 1 210 - -
Vvi4g1092 211 SMART serkin_6 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1092 211 Pfam Protein tyrosine and serine/threonine kinase 2 199 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1092 Vvi-Chr4 17821355 17824440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1092 1 198 MAP Kinase Kinase Kinase AT5G66710 68.182 1.32e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi4g1092 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1092 - - vvi:100246176 397.897