Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1090 ATGACAACCGCCATGAATCAGCAGGTCCAAGATCATATGGAGCTCTTCACTCATATGTATCCCGGGTTGTACACTCAGGCGATGCCGGAACAAGGGGAGGCGAAGGTGCGGCGGAGGAGGAAGAAGAGCAAAGGAGAAAGTAGCAGTGGGTGTGCGAGGAAGAGGAAGCTGAGCGAGGAGCAAGTTACTCATCTAGAGTTGAATTTTGGTAATGAACATAAATTGGAGTCTGAGAGGAAGGATAAGATCGCCTCGGAGCTGGGGTTGGACCCCCGACAAGTGGCCGTCTGGTTTCAGAACCGGAGGGCTCGCTGGAAGAGTAAGAAGCTGGAGGAGGAGTTCTCCAAGTTGAAGATAGTCCACGAAAGTGTTGTGGTGGAGAAGTGTCGCCTTGAAACAGAGGTATTAACGCTAAAGGAACAGCTCTCAGACGCCGAGAAGGAGATACGACGGCTGTCGGAGCGCTCCGACGGCGTTTCAAGCAATAGCCCGACCTCGTCCTTGTCGAATGCGGTAGACGTAGACCCACCATTTTTTGGGGAATTTGGGGTGGTAGATGGGTTGGATAATGTGTTCTACATTCCGGAAAACAATTATGTTAGTGGCATGGAATGGGGATATCTATATGATATGTAA 636 0.5047 MTTAMNQQVQDHMELFTHMYPGLYTQAMPEQGEAKVRRRRKKSKGESSSGCARKRKLSEEQVTHLELNFGNEHKLESERKDKIASELGLDPRQVAVWFQNRRARWKSKKLEEEFSKLKIVHESVVVEKCRLETEVLTLKEQLSDAEKEIRRLSERSDGVSSNSPTSSLSNAVDVDPPFFGEFGVVDGLDNVFYIPENNYVSGMEWGYLYDM* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1090 211 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Vvi4g1090 211 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Vvi4g1090 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 163 IPR045224 GO:0003700
Vvi4g1090 211 Pfam Homeodomain 54 106 IPR001356 GO:0003677
Vvi4g1090 211 MobiDBLite consensus disorder prediction 27 57 - -
Vvi4g1090 211 SUPERFAMILY Homeodomain-like 51 109 IPR009057 -
Vvi4g1090 211 CDD homeodomain 53 109 IPR001356 GO:0003677
Vvi4g1090 211 SMART HOX_1 51 112 IPR001356 GO:0003677
Vvi4g1090 211 Gene3D - 43 116 - -
Vvi4g1090 211 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Vvi4g1090 211 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Vvi4g1090 211 Coils Coil 135 162 - -
Vvi4g1090 211 FunFam homeobox-leucine zipper protein ATHB-40 47 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1090 Vvi-Chr4 17798207 17799758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1090 5 209 Homeobox Transcription Factor Family AT4G36740 57.407 6.29e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi4g1090 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1090 K09338 - vvi:100253069 407.142