Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1070 ATGTCACCCGCAAGCGGCGCTTGCGGGGGTAGTGGTAGCAATGATGTTGGTGATTTTGAATGTAATATCTGCTTTGAATTGGCTCAAGACCCCATTGTTACTCTTTGTGGTCACCTTTACTGCTGGCCTTGCCTTTATGAATGGCTCCATCATCACTCACATTCCCAAGAATGCCCGGTTTGTAAGGCCCTCATACAGGAGGAAAAGTTGGTTCCTCTTTATGGCAGGGGGAAAACACCTAGTGATCCCAGATCAAAATCAATTCCTAATGATAGCATACCTAGTCGCCCAGCAGGGCAGAGACCTGAAACAGCTCCTCCAGTAGCAAACCCCGTTTCACATCTTGGGGTTGGATTGATGAGAGGGTTTGCACCAGTTCGAACTGCAAGATTTGGTAATTTCGCATTGTCTGCTGCTTTTGATTGTGGCTGTATGCTGTCGTTTACTTGTTTCTTGACTGCACTCTCTGCTGTCATTATAGACAATTCTTCATTGGCTTTACTAGAACTGGGATGCCTTGAGGTTTTGAATGGTAGGTTTGTATTCTAG 549 0.4572 MSPASGACGGSGSNDVGDFECNICFELAQDPIVTLCGHLYCWPCLYEWLHHHSHSQECPVCKALIQEEKLVPLYGRGKTPSDPRSKSIPNDSIPSRPAGQRPETAPPVANPVSHLGVGLMRGFAPVRTARFGNFALSAAFDCGCMLSFTCFLTALSAVIIDNSSLALLELGCLEVLNGRFVF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1070 182 MobiDBLite consensus disorder prediction 74 107 - -
Vvi4g1070 182 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 5 75 - -
Vvi4g1070 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 108 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi4g1070 182 SMART ring_2 21 61 IPR001841 -
Vvi4g1070 182 SUPERFAMILY RING/U-box 17 74 - -
Vvi4g1070 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 79 IPR013083 -
Vvi4g1070 182 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vvi4g1070 182 Pfam Zinc finger, C3HC4 type (RING finger) 19 66 - -
Vvi4g1070 182 CDD RING-HC_AtRMA-like 19 63 - -
Vvi4g1070 182 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1070 Vvi-Chr4 17564079 17565202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1070 13 137 C3H Transcription Factor Family AT2G23780 66.667 4.68e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1070 K10666 - vvi:100246078 296.589