Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1064 ATGGCTTGGCTATCCTTCATCTCTGTCTTTACTCTTTCTCTGATTTCTTTCTCTTCCTCCATTCTTGCTCAGCAATCATATGTGGGAAAGGGTACAACAGACTGCGACAACAATAATTTAACTTCTGTTCTTGGTTACGCCTGCAATGGTGTCAACGCTAGTTGCCAAGCTTTCCTTATCTTCAGATCTGAACCCCCATATAACGATGTTTCTTCCATATCTGATCTTCTGGGGTCTGACCCATCTCAGCTTGCCCAAATCAATTCAGTTGATGAGACTGCTACATTTGAAACAAAGAAAGAGGTCATTGTTCCAGTCAATTGCTCCTGTTCAGGTGAGTTCTCTCAGGCAAACACCTCTTATGTTGTTCAGCATGGAGATACCTACTTATTGATAGCAAATAACACCTTCGAAGGCCTCTCTACATGTCAAGCTCTCCGGAGTCAAAGAACTTCTCTAACTACTAATATATATACTGGTACAAAGCTTACTGTTCCTCTTAGGTGTGCTTGTCCTACCAAGAACCAAAGTGATGTGGGTGTCAAGTATCTCATGAGTTACTTGGTCGCTTCTGGTGATTATGTTTCAAGCATTAGTGTGAGATTTGGTGTGGATACTGGAATGACTCTTGAAGCTAATGAGCTTTCTGAGCAAAACCCCAACATTTATCCCTTTACTACCCTTCTAATTCCCCTGCAAAATCTGCCCTCAAGTTCCCAAACTATAGTGCCGCCGCCGCCGCCGCCACCATCACCTCCACCTCCAACTGCTGTATCGTCCCCAAGTAAAAGCTTGAAGAAAACATGGGTTTATGTCGTTGTTGGAGTTGTTGCCGGAAGTGCTCTTGTATTGCTGTTTGGCTCTGTTATTTTCTTCAAATTCTTTAGGAAAACTAGGAAGAAAACTGATCCAATTGCTATCTCAGAGAGCTTTGAGGCATGTGAGAAACCACTTAAGGAGGAACAGCATGAGTTCTTGGAGAGTATATCTAGCATAGCACAATCCCTCAAAGTTTACAAATTTGAAGAACTACAATCTGCAACTGATAATTTCAGCCCCAATTGTAGGATAAAGGGGTCTGTTTACCGTGGCACGATTAAAGGGGATTTGGCTGCCATAAAGAAAATGGATGGAGAGGTGTCAAATGAAATAGCTTTACTAAACAAGATCAACCATTTCAATGTCATCCGCCTCTCTGGCATTTGTTTTAATGATGGGCATTGGTACCTCGTCCATGAGTATGCTGTTAATGGACCCTTGACTGATTGGATCTATAACAACAATGATGACAGCAGGTTTTTAGTTTGGATGCAGAGAATTCAAATTGCTTTGGATGTGGCCACAGGGCTTAACTATCTCCATAGCTATACCAGCCCTCCCTATGTCCACAAGGACATAAAAAGCGGTAATGTGCTTCTTGATAGTGACTTCAGGGCTAAGATTGCTAACTTCGGTTTAGCAAGGTCAGCAGAGGGGCAGGAGGGTCAGTTTGCCTTAACCAGGCATATCATTGGGACAAGAGGTTACATGGCACCAGAGTATCTGGAGAATGGTTTGGTCTCCACAAAGCTTGATGTTTATGCATTTGGGGTTCTCATGCTGGAGATGCTTACAGGGAAAGAAGTTGCTGCATTATATGAAGGTGAGAACATGCACCTACCAGATGTCTTAGTTGCTGTGCTCCATGAGGGAGATGGAAAGGAGAAGTTGAGGAACTTCATTGATCCTTCCCTGAGTGGGAATTATCCTTTGGAACTTGCCATTGTTATGATCAGATTGATAGATAGCTGCTTAAAGAAATCTCCAGCAAGTCGCCCAGATATGGTTGAGATAGTGCAAGCCCTGTCAAGAACCTTGACCACTTCAGTGGCCTGGGAATTGTCTAATAATGTCTCAGGATACCAAAATTCCACACAACACCCAAAAGTTAAGCCAACCTGTTTGACAGAGACAGAGAGCATAGTTTATAACCGCCTCATCCCCATGAGATCTTCCAATTCAACCAAAATGGCCTCTCCATCTTTCTTCTCCGTCTTCACTCTCTCCCTGATTTGTTGCTTTTCCTTGATTCTTGCTCAGCAGTCTTACCTCGGCCTGGGCACAGCAGACTGTTACAATAATAATTATACTACTGTTCTTGGTTACACCTGTAATGGTGTAAACACCACCTGCCAAACTTACCTCATCTTCAGATCAGAATCCCCATATAACAATGTTTCTTCCATCTCTGATCTCTTGGCTTCTGACCCATCTCAGCTCGCTCAAATCAATTCAGTAACTGAGACTGCTACTTTTGACACAAACAAGGAGGTGATTGTTCCTGTCAACTGCTCTTGTTCAGGTAACTACTCTCAGACAAACACATCTTATGTTGTTAAAAATGGAGACTATCCCTTATGGATTGCAAACAATACTTTCCAAGGCCTCTCAACCTGTCAGGCTCTCCTAAACCAAAACCCTTCTGTAAGTGCTACAAATCTAAATCCTGGTACTTCAATTACTGTTCCTCTCAGGTGTGCTTGTCCAACAAAGGCCCAAAGCGATGCGGGTGTCAAGTATCTAATGAGTTACCTGGTCGCTTATGGTGATACTGTTTCAGCTATAAGTGGGAGGTTTGGTGTCGATACTGAAAGGACTCTTGAAGCTAATGAGCTTTCTGAGCAAGACACCATTAATCCTTTTACTACCCTTCTAATTCCTCTGCAAAATCCACCTTCAAGCTCCCAAACCATAAAGACATGGGTGTATGTTATTGTTGGAGTTGCTGCAGGAGTTGTTCTTCTTTTGTTCTTTGGCTATGTCATTTTCGTAAAATTCTTCAGAAAAACCAAGAAGAAAAATGATCAAATTGCTGTCTCAGAGAGCTTTAAACCACTTGAAAAACCCCTCAAGGTGGAAGAACATGAGTTCTTCGAAAGTATATCCAGCATGGCACAATCCGTCAAAGTTTACAAATTTGAGGAACTACAATCTGCAACTGACAATTTCAGCCCAAGTTGTCTGATTAAGGGATCTGTTTATCGTGGCACAATTAAAGGGGATTTGGCTGCCATTAAGAAAATGGATGGAAATGTGTCAAACGAAATAGCTTTACTAAGCAAGATCAACCATTTTAATGTCATCCGCCTCTCTGGCATTTGTTTTAATGATGGGCATTGGTATCTAGTTCATGAGTATGCTGTTAATGGATCCTTGAGTGATTGGATCTATTACAACAACAATGATAGGAGATTCTTGGTTTGGACGCAGAGAATTCAGATTGCTTTGGATGTGGCCACAGGGCTTAACTATCTCCATATACATGTCAGCCCTTCTTATATCCACAAGGATATGAAAAGTAATAATGTGCTTCTCGATGGGGATTTCAGGGCTAAGATTGCTAACTTTGATCAGGCAAGGTCAGCAGAGGGGCAGGAAGGTCAGTTTGCCTTGACGAGGCACATCGTTGGGACAAAGGGTTACATGGCTCCAGAGTATCTGGAGAATGGTTTGATCTCCACAAAGCTCGATGTCTATGCGTTTGGGGTTCTCATGCTGGAGATATTTACTGGGAAAGAAGTTGCCGCTCTATATGGAGGGGAAAGCATACACTTATCAGAGGTCTTGGCTGCTGTGCTTCATGAGGATGACGGAAAGGAGAAATTGGGGGACTTCATAGATCCGTCTTTAGATGGGAATTATCCTCCAGAACTTGCCATTTTTATGATCAGATTGATAGATAGCTGCTTAACGAAAGCTCCAGCAGGTCGCCCAGACATGGATGAGATAGTGCAATCCCTATCAAGAATCTTGGCCTCTTCACAAGCCTGGGAATCGTCTAATAATGGTGCAGGATAA 3837 0.4266 MAWLSFISVFTLSLISFSSSILAQQSYVGKGTTDCDNNNLTSVLGYACNGVNASCQAFLIFRSEPPYNDVSSISDLLGSDPSQLAQINSVDETATFETKKEVIVPVNCSCSGEFSQANTSYVVQHGDTYLLIANNTFEGLSTCQALRSQRTSLTTNIYTGTKLTVPLRCACPTKNQSDVGVKYLMSYLVASGDYVSSISVRFGVDTGMTLEANELSEQNPNIYPFTTLLIPLQNLPSSSQTIVPPPPPPPSPPPPTAVSSPSKSLKKTWVYVVVGVVAGSALVLLFGSVIFFKFFRKTRKKTDPIAISESFEACEKPLKEEQHEFLESISSIAQSLKVYKFEELQSATDNFSPNCRIKGSVYRGTIKGDLAAIKKMDGEVSNEIALLNKINHFNVIRLSGICFNDGHWYLVHEYAVNGPLTDWIYNNNDDSRFLVWMQRIQIALDVATGLNYLHSYTSPPYVHKDIKSGNVLLDSDFRAKIANFGLARSAEGQEGQFALTRHIIGTRGYMAPEYLENGLVSTKLDVYAFGVLMLEMLTGKEVAALYEGENMHLPDVLVAVLHEGDGKEKLRNFIDPSLSGNYPLELAIVMIRLIDSCLKKSPASRPDMVEIVQALSRTLTTSVAWELSNNVSGYQNSTQHPKVKPTCLTETESIVYNRLIPMRSSNSTKMASPSFFSVFTLSLICCFSLILAQQSYLGLGTADCYNNNYTTVLGYTCNGVNTTCQTYLIFRSESPYNNVSSISDLLASDPSQLAQINSVTETATFDTNKEVIVPVNCSCSGNYSQTNTSYVVKNGDYPLWIANNTFQGLSTCQALLNQNPSVSATNLNPGTSITVPLRCACPTKAQSDAGVKYLMSYLVAYGDTVSAISGRFGVDTERTLEANELSEQDTINPFTTLLIPLQNPPSSSQTIKTWVYVIVGVAAGVVLLLFFGYVIFVKFFRKTKKKNDQIAVSESFKPLEKPLKVEEHEFFESISSMAQSVKVYKFEELQSATDNFSPSCLIKGSVYRGTIKGDLAAIKKMDGNVSNEIALLSKINHFNVIRLSGICFNDGHWYLVHEYAVNGSLSDWIYYNNNDRRFLVWTQRIQIALDVATGLNYLHIHVSPSYIHKDMKSNNVLLDGDFRAKIANFDQARSAEGQEGQFALTRHIVGTKGYMAPEYLENGLISTKLDVYAFGVLMLEIFTGKEVAALYGGESIHLSEVLAAVLHEDDGKEKLGDFIDPSLDGNYPPELAIFMIRLIDSCLTKAPAGRPDMDEIVQSLSRILASSQAWESSNNGAG* 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1064 1278 ProSiteProfiles Protein kinase domain profile. 925 1264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1064 1278 Gene3D LysM domain 171 241 IPR036779 -
Vvi4g1064 1278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vvi4g1064 1278 ProSiteProfiles LysM domain profile. 855 899 IPR018392 -
Vvi4g1064 1278 Gene3D LysM domain 854 913 IPR036779 -
Vvi4g1064 1278 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 675 1273 - -
Vvi4g1064 1278 SUPERFAMILY Protein kinase-like (PK-like) 331 615 IPR011009 -
Vvi4g1064 1278 FunFam PTI1-like tyrosine-protein kinase 3 1060 1274 - -
Vvi4g1064 1278 ProSiteProfiles LysM domain profile. 119 165 IPR018392 -
Vvi4g1064 1278 SUPERFAMILY Protein kinase-like (PK-like) 976 1260 IPR011009 -
Vvi4g1064 1278 SMART LysM_2 789 836 IPR018392 -
Vvi4g1064 1278 SMART LysM_2 186 231 IPR018392 -
Vvi4g1064 1278 SMART LysM_2 120 166 IPR018392 -
Vvi4g1064 1278 SMART LysM_2 856 900 IPR018392 -
Vvi4g1064 1278 Pfam Protein kinase domain 1019 1258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1064 1278 Pfam Protein kinase domain 374 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1064 1278 ProSiteProfiles LysM domain profile. 185 230 IPR018392 -
Vvi4g1064 1278 MobiDBLite consensus disorder prediction 240 259 - -
Vvi4g1064 1278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1106 1118 IPR008271 GO:0004672|GO:0006468
Vvi4g1064 1278 ProSiteProfiles Protein kinase domain profile. 280 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1064 1278 CDD LysM 856 899 IPR018392 -
Vvi4g1064 1278 FunFam PTI1-like tyrosine-protein kinase 3 415 629 - -
Vvi4g1064 1278 ProSiteProfiles LysM domain profile. 788 835 IPR018392 -
Vvi4g1064 1278 Pfam LysM domain 857 900 IPR018392 -
Vvi4g1064 1278 Pfam LysM domain 790 836 IPR018392 -
Vvi4g1064 1278 Pfam LysM domain 187 231 IPR018392 -
Vvi4g1064 1278 MobiDBLite consensus disorder prediction 239 262 - -
Vvi4g1064 1278 CDD LysM 186 230 IPR018392 -
Vvi4g1064 1278 Gene3D Transferase(Phosphotransferase) domain 1 416 633 - -
Vvi4g1064 1278 Gene3D Transferase(Phosphotransferase) domain 1 1061 1276 - -
Vvi4g1064 1278 Gene3D Phosphorylase Kinase; domain 1 321 414 - -
Vvi4g1064 1278 Gene3D Phosphorylase Kinase; domain 1 966 1059 - -
Vvi4g1064 1278 SMART serkin_6 351 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1064 1278 SMART serkin_6 996 1264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1064 Vvi-Chr4 17484866 17489527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1064 14 629 Receptor kinase-like Gene Family AT2G23770 46.795 3.74e-174 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi4g1064 Pkinase 2.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1064 - - vvi:100264999 1206.43