Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1060 ATGGATTGGATCAAGATCCTAGAAGGTTCTGGCCATAAAATCTCAGAAGTGCAATATCACGGGACAGATGGGGATGGCATAATTTGGGGAGAGCCTTCAATTTCAGAGCATGGTAGGATGAAATTCACACTTCAGGGTGCACCCACAGATTTTGATGATCAAGATATCGCAGTTGCTATTGTTCGTTCCATTGAAGATTATGAAGCAGAGGAAGATAAAAAACTGAAAAAGTTGGTTGATAATGAATCTCAATTAAAGGAAGATGAACAACTTGCCAAAGCTCTTCAAGAGAGTTTGAATATGGAGTCTCCTCCTCGACGGGATGCTCGAAATATATTTCAACCTTTGACATTCTCCTCACTTGGTTTTAGGATCTGTGCTCGGTGCAACCTTGAAATTGGTCATGAAAGACATTTGAGGCGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGTCATGCTTGTGGTCTTCGCATTTTTGATCTTGAGTTTTCTGTGTCTGGAAATCGCCCATATCATGAATCATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTATTCCATCAAATGCAGCTGGAGAAACAGAGTATAGAGCACATCCTTTCTGGATGCAAGAGTACTGTCCCTCACATGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAACGAACAGAGGTAAGGGACATTAGGTATCTATCACTTGATGATGGTAGGAAACTATGTCTGGAGTGCCTGGACTCTGCTATCATGGATACACTAGAGTGCCAGCCTCTTTACCTTCAAATACAAGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAATCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGTGGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACTATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGATTGCTGACCGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAAACTGAAAGGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGAATCAGAGATACATTCAAGCTCTGGTAACAATGTTTCTTCAGCTTCAACGCCATCATCATCATCCACATCAGAGAAGGGTGCACGGTCTCAGTTTGAAAAGAAACTCGGTGAGTTTTTTAAAGATCAGATAGAGACAGATAGTTCACCAGCTTATGGGGACGGATTTAGGGCTGGTAACCAAGCAGTGCAGCAGTACGGCCTCAAGAGTACCCTCGACCATATTCGGCTGACAGGAAGCTTTCCTTACTGA 1467 0.4397 MDWIKILEGSGHKISEVQYHGTDGDGIIWGEPSISEHGRMKFTLQGAPTDFDDQDIAVAIVRSIEDYEAEEDKKLKKLVDNESQLKEDEQLAKALQESLNMESPPRRDARNIFQPLTFSSLGFRICARCNLEIGHERHLRRMGAVWHPECFRCHACGLRIFDLEFSVSGNRPYHESCYKDQNHPRCNVCKNFIPSNAAGETEYRAHPFWMQEYCPSHEHDGTPRCCSCERTEVRDIRYLSLDDGRKLCLECLDSAIMDTLECQPLYLQIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKSGHHLLPETRGLCLSEEQTVSTISRRPRISTGYRIINMMTEPCRLVRRCEVTAILILYGLPRLLTGTILAHEMMHAWLKLKGYRNLRQDVEEGICQVLAYMWLESEIHSSSGNNVSSASTPSSSSTSEKGARSQFEKKLGEFFKDQIETDSSPAYGDGFRAGNQAVQQYGLKSTLDHIRLTGSFPY* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1060 488 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 86 105 IPR003903 -
Vvi4g1060 488 SMART uim 51 70 IPR003903 -
Vvi4g1060 488 SMART uim 86 105 IPR003903 -
Vvi4g1060 488 PANTHER PROTEIN DA1-RELATED 2 5 488 IPR045218 -
Vvi4g1060 488 MobiDBLite consensus disorder prediction 412 433 - -
Vvi4g1060 488 SMART lim_4 125 177 IPR001781 -
Vvi4g1060 488 CDD LIM_DA1 126 178 - -
Vvi4g1060 488 ProSiteProfiles LIM domain profile. 124 184 IPR001781 -
Vvi4g1060 488 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 151 - -
Vvi4g1060 488 Gene3D Cysteine Rich Protein 122 185 - -
Vvi4g1060 488 Coils Coil 78 98 - -
Vvi4g1060 488 Pfam Protein DA1 275 483 IPR022087 -
Vvi4g1060 488 Pfam LIM domain 126 180 IPR001781 -
Vvi4g1060 488 ProSitePatterns LIM zinc-binding domain signature. 126 160 IPR001781 -
Vvi4g1060 488 MobiDBLite consensus disorder prediction 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1060 Vvi-Chr4 17459290 17465386 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi4g1060 DA1-like 1.6e-101 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1060 - - vvi:100244429 954.125