Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1059 ATGGATTGGCTAACCAAGATTCTAAAAGGCTCTGGCCATAAAATCTCAGAAGGCCAGTATCATGGGAGATATGGGGATGACAGAATTTGGGAAGAGCCGTCAACTCCTGTGGATGTATCCACAGATTTTGACCATGATGATCTTGCTGTTGCTATGGCTCGTTCCCTTGAAGATTACCCTGAGGAAGATCAGAAAGGGAAAAAAGTAGTTGATACTGAATCTCAATTGGAGGAAGATGAACAACTTGCTAGAGCTCTTCAAGAGAGTTTGAACGTGGAGTCTCCTCCTCGACATGATGCTGGAAATATATTTCAACCTTTTCCATCATTCTTTTCACCTGGTTATAGGATCTGTGCTGGGTGCAACTGCGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGTTTTCTATGTCCGGAAGTCATCCTTATCACAAATCATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTTATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGGCAAGGGACACTAGATATCTATCACTTGATGATGGTAGGAAACTATGTCTGGAGTGTCTGGACTCTGCTATCATGGAAACTGTAGAGTGCCAGCCTCTTTACCTTGAAATACAAGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAGTCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAGACTGTTAGCACTATTTCGGGGAGGCCTAGGATTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGGTTGCTGACTGGGTCGATCCTGGCTCACGAGATGATGCATGCATGGCTCCGACTGAAAGGATATCCAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGATTCAGAGATATATTCAAGTGCTGGTAGTGATGTTGCTTCGGCTTCTTCTTCTTCTTCATCATCATCATCATCATCATCCTCATCCACAACATCAAAGAAGGGTGCACGGTCTCAGTTTGAGAAGAAACTTGGTGAGTTTTTCAAACACCAGATAGAGACGGATAGTTCACCAGCTTATGGGGACGGATTTAGAGCAGGTAACCAAGCAGTGCAGAAGTACGGCCTCAAGAGTACCCTTGACCATATTCGGCTGACAGGAAGCTTTCCTTACTGA 1467 0.4444 MDWLTKILKGSGHKISEGQYHGRYGDDRIWEEPSTPVDVSTDFDHDDLAVAMARSLEDYPEEDQKGKKVVDTESQLEEDEQLARALQESLNVESPPRHDAGNIFQPFPSFFSPGYRICAGCNCEIGHGRYLSCMGAVWHPECFRCRACGLPIFEHEFSMSGSHPYHKSCYKEQNHPKCDVCRNFIPTNAAGLIEYRAHPFWMQKYCPSHEHDGTPRCCSCERMEARDTRYLSLDDGRKLCLECLDSAIMETVECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVSTISGRPRIGTGYRIIDMMTEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLSQDVEEGICQVLAYMWLDSEIYSSAGSDVASASSSSSSSSSSSSSSTTSKKGARSQFEKKLGEFFKHQIETDSSPAYGDGFRAGNQAVQKYGLKSTLDHIRLTGSFPY* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1059 488 Coils Coil 69 89 - -
Vvi4g1059 488 Pfam Protein DA1 267 483 IPR022087 -
Vvi4g1059 488 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 143 - -
Vvi4g1059 488 Pfam LIM domain 118 172 IPR001781 -
Vvi4g1059 488 Gene3D Cysteine Rich Protein 111 176 - -
Vvi4g1059 488 MobiDBLite consensus disorder prediction 413 433 - -
Vvi4g1059 488 PANTHER PROTEIN DA1-RELATED 2 3 488 IPR045218 -
Vvi4g1059 488 ProSitePatterns LIM zinc-binding domain signature. 118 152 IPR001781 -
Vvi4g1059 488 CDD LIM_DA1 118 170 - -
Vvi4g1059 488 ProSiteProfiles LIM domain profile. 116 176 IPR001781 -
Vvi4g1059 488 SMART uim 43 62 IPR003903 -
Vvi4g1059 488 SMART uim 77 96 IPR003903 -
Vvi4g1059 488 MobiDBLite consensus disorder prediction 413 432 - -
Vvi4g1059 488 MobiDBLite consensus disorder prediction 57 77 - -
Vvi4g1059 488 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 77 96 IPR003903 -
Vvi4g1059 488 SMART lim_4 117 169 IPR001781 -
Vvi4g1059 488 FunFam Protein DA1-related 1 112 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1059 Vvi-Chr4 17450729 17456194 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi4g1059 DA1-like 1.1e-107 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1059 - - vvi:100258119 984.171