Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1057 ATGGGAATAGCAACACCGCCTCTTCCACCTGTTTTCTCTCACTCAAAGGTCCACAACCCAATTCCGATCGCCCACAAGTCCAATTTTGCAAATTCTATGTCCCAAGACTTCCACCAAGGTATCTTCAGTTTCTCGAATGGGTTCGAGAGATCGGCGGTGACACACCAAGAACAGCAGCAGCAACAGCAGCACATAACACAGCAGATCCGGAGGGATAAGCTGAGGGTGCAAGGGTTCGAACCGCCACCGCCATTAGTGGCCATAGAAGAAGAAGAATCTGGTGGGCTTCCCGTGTACGAGACAGCTGGGATGTTGTCTGAAATGTTCAATTTTGGTCCTGGAGCCACCACGGCCGCGGAACTGTTGGAGCATCAGCTGCCATCGAATTATCGGAACCCGCGGCCAGCAACGGCGGTAACGGGGGTGAGTAACTCGGAATGGTATGGGAGCAGACAAGGGATGGTGGGAGGTTTGGGACCGTTGGGTGATTCAAAGAATCAAAACGTAAATAACCGTGACAGTCTAGCTCAGCATCATCATCAGATTTCAAGCATTAATGCGGACTCAGCTGCTGCCATGCAGCTTTTCCTCATGAATCCGCAACCCAGATCACCTTCTCCACCTCCACAACCCCATCCTCATCCCCATCCTCCTGCAACTTCTTCTACACTTCATATGCTGCTTCCAAACCAATCCACTTCCCTCCAAGGCTTTGCTACTGCTTCTGCACCAGGAGGGGGGGCTTTTGGTGCTAGTGTAATACCTCCATCCCAATTCACATGGGTTCCTGATAGCGGTCATGAAAGCGGTAACAACCCTAGTGAAATTGGAGGAATTGTAGAAGGCCAAGGCCTTTCCTTGTCCCTATCCTCTTCATTGCAGCATTTGGAAGCAGCTAAAGCCGAGGAATTGAGGATGGGAGACAGCGGCATGCTGTTCTACGGCCAAGGAGGGGGTTCTTCTTCGGCTCAATATCCGTATAAGAGCTTGGGCGGTCATCAACAGCCATTGCATTTGCAAGGGGGAGTGGGTCACAACCACCAAGTTCATGTCGGGTTTGGATCTTCATTGGGAGCGGTGAATGTTATGAGGAATTCCAAGTATGTGAAGGCTGCCCAAGAATTATTGGAAGAATTTTGCAGTGTTGGGAGGGGTCAGTTCAAGAAGAACAAGTTTGGGAGACACAACACCAACCCTAATTCTAATCCAGGTGGCGGCAGTGCTGGTGGAGGCGGCTCTTCATCCTCGTCAAAAGATCTTCCTCCTTTGTCAGCTGCTGATAGAATTGAGCATCAGAGAAGAAAGGTCAAACTATTATCCATGCTTGATGAGGCATGTGGATCGAAGATACAATCACTACTGTGA 1365 0.5004 MGIATPPLPPVFSHSKVHNPIPIAHKSNFANSMSQDFHQGIFSFSNGFERSAVTHQEQQQQQQHITQQIRRDKLRVQGFEPPPPLVAIEEEESGGLPVYETAGMLSEMFNFGPGATTAAELLEHQLPSNYRNPRPATAVTGVSNSEWYGSRQGMVGGLGPLGDSKNQNVNNRDSLAQHHHQISSINADSAAAMQLFLMNPQPRSPSPPPQPHPHPHPPATSSTLHMLLPNQSTSLQGFATASAPGGGAFGASVIPPSQFTWVPDSGHESGNNPSEIGGIVEGQGLSLSLSSSLQHLEAAKAEELRMGDSGMLFYGQGGGSSSAQYPYKSLGGHQQPLHLQGGVGHNHQVHVGFGSSLGAVNVMRNSKYVKAAQELLEEFCSVGRGQFKKNKFGRHNTNPNSNPGGGSAGGGGSSSSSKDLPPLSAADRIEHQRRKVKLLSMLDEACGSKIQSLL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1057 454 SMART prehox3 357 452 IPR006563 -
Vvi4g1057 454 MobiDBLite consensus disorder prediction 388 427 - -
Vvi4g1057 454 MobiDBLite consensus disorder prediction 201 218 - -
Vvi4g1057 454 MobiDBLite consensus disorder prediction 392 421 - -
Vvi4g1057 454 Pfam Associated with HOX 362 445 IPR006563 -
Vvi4g1057 454 MobiDBLite consensus disorder prediction 198 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1057 Vvi-Chr4 17433053 17435532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1057 23 445 Homeobox Transcription Factor Family AT4G36870 38.596 2.40e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1057 - - vvi:100261554 773.081