Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1055 ATGGCTGAAATTAGACTTACCAAGGTAGAACAGGGTCAAACCAAAATCAGAAATGTTCCAATTGCTGTGACCCCGGAAGGTTTTTGGTGTTGCCCCTCGCCTGTTGTTTTCCAAAAGACTCTCAAAGCTCAAAACCCTCTAAACAAACCCAAATCCTCACCCCCACCACCCACCAAGACCTCTGTTCAGAAGAAGCAGGCCCCAATGACTGAGAGAAAACCGACTTCCACTCCATCAAGGCCAGGAGTTGTTTCTGATGATCAAAGAACTTTTGCTTCTGATGCCCCTGCTCTAAGTGCATTGGTTAATGAGAGGGCCCCAAGGCCCAAGATCGAAAATTTACCTAGGAAGGTGGCAATCGAGTTTGGTGAACCTGGAACCAGTGATATGAAAGTGATCTTAATGGGAAAGCAGGGGTTTTATGTGAAGTTGAGTGTTCACAAGAACGTTCTCATGGAAAATAGCAGTTTTTTTGCAGACAAACTTTCTGAAGAACAGTCTAATTTGTCCTGTCTTGAAATCGAGGATTGTGAAGACATTGAAATTTATGTTGAAACGGTGGGATTGATGTATTGTAAAGAAACCAAGCAACGGTTGATCAAACAAAGTGTCTCACGGGTACTTCGTATTCTCAAGGTTGCAGAGCTACTTGGCTTCAACTCATGCATGCAATCATGTTTGGAGTATTTAGAGGCAGTCCCTTGGGTTGGTGAAGAAGAAGAAGAAAAGGTGGTTTCTTCGGTTCTGCAACTCCAGGTAGAGGGTATTGGGGTCACCCCAGTACTGAAACGAGTCTCTTCTGAAGTCAGTAACTGCCCGAAGGACACACTCTTCCACATAATGGAACTGGTTCTAAAGAGTAGTGAGGAGAGAGGCCGACGTGAGATGAAATCTATAGTCCTGAAGCTCCTTCGAGAAAATAGCAGTGTCCCCAGCTATGCGGGTTCAGCTGACATCTGCAATGAAACTATTTATAGCTCATGCAGAAGCTGCTTGGATTCATTATTATCTATGTTCAGGCAAGCTGCTGAACCAGGGTTTACTGATAAACCCATGGAAAACAAAGAACCTGTGTTGAAGCAGATAACTTTGGAGGCTGATAACCTCTCATGGTTACTTGAAATTTTAGCTGACAGGCAAGCAGCAGATGAGTTTGCAGTGATGTGGGCTAGCCAGCAAGAGTTAGCAACCCTACATACAAAGCTTCCTGTTGTCTCTCGCCACCATGTTAGCTGCATTACGGCAAGGCTATTTGTTGGAATAGGAAGGGGGGAGCTGCTACCGTCAAAAGACACCCGTCAGTTGTTGTTACAGACCTGGTTGCAGCCTTTGATCAATGACTACAGCTGGTTACAACATGGGTGTAGGTCATTTGACAGGAAGGTTGTAGAGGAAGGAATTGGTAGGACAATCCTGACACTGCCTCTAGAGGATCAGCAGAGTATTTTGCTTGCTTGGTTGGGCAGTTTTCTAAAGGCTGGTGATAACTGCCCAAATCTTCAGAGGGCCTTTGAGGTCTGGTGGCGGAGAACTTTCGTTAGACCTTATGTTGAACCCCAAGGAAATCTAATGTAG 1575 0.4508 MAEIRLTKVEQGQTKIRNVPIAVTPEGFWCCPSPVVFQKTLKAQNPLNKPKSSPPPPTKTSVQKKQAPMTERKPTSTPSRPGVVSDDQRTFASDAPALSALVNERAPRPKIENLPRKVAIEFGEPGTSDMKVILMGKQGFYVKLSVHKNVLMENSSFFADKLSEEQSNLSCLEIEDCEDIEIYVETVGLMYCKETKQRLIKQSVSRVLRILKVAELLGFNSCMQSCLEYLEAVPWVGEEEEEKVVSSVLQLQVEGIGVTPVLKRVSSEVSNCPKDTLFHIMELVLKSSEERGRREMKSIVLKLLRENSSVPSYAGSADICNETIYSSCRSCLDSLLSMFRQAAEPGFTDKPMENKEPVLKQITLEADNLSWLLEILADRQAADEFAVMWASQQELATLHTKLPVVSRHHVSCITARLFVGIGRGELLPSKDTRQLLLQTWLQPLINDYSWLQHGCRSFDRKVVEEGIGRTILTLPLEDQQSILLAWLGSFLKAGDNCPNLQRAFEVWWRRTFVRPYVEPQGNLM* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1055 524 MobiDBLite consensus disorder prediction 45 87 - -
Vvi4g1055 524 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 118 518 IPR038920 -
Vvi4g1055 524 CDD BTB_POZ_ZBTB_KLHL-like 128 217 - -
Vvi4g1055 524 MobiDBLite consensus disorder prediction 58 86 - -
Vvi4g1055 524 Pfam BTB/POZ domain 142 231 IPR000210 GO:0005515
Vvi4g1055 524 SUPERFAMILY POZ domain 143 230 IPR011333 -
Vvi4g1055 524 Gene3D Potassium Channel Kv1.1; Chain A 118 232 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1055 Vvi-Chr4 17421394 17424840 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi4g1055 BTB 0.0001 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1055 - - vvi:100252985 996.882