Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1053 ATGGAAGTACTTCCTTGTTCTGGAGTTCAGTATGTTGGAGAATCTGATTGTCCTCAACAGAGTCCAGGAACAACTTTTATATATGATGGAGATTCAAACTGTGTTGAACATGGACAACAAGTTCAATTGGCAGATGATAAAATGGATAAATTATTGCTAAATGCGGAAAGATCTCAGAAAGAAAAAAAGGGTGAAGTCGAAGGGAGGGTTGAGGAGCTGCCTACTTCAGAGGGTCACTGTAGTGGAGCTTTGTATTTTGATTGTGAGGTGGAGGACCAAAAGCAACCTTGTAATTCTCTATATTTTGAAGATGGCAACTTAAATGTGCAGAATGGTTGCACAGAACCTTGCTTAGCCTCTGATAGCTCTCATCTCATTGTGGATACCATTGAGAGTGAACTGCCAAGCAACACTGGGGAGGGGGAGTTGTCTGTTTCAGAGCCCAAGTGGCTAGAACAAGATGAGACCGTGGCATTATGGGTCAAGTGGCGAGGGAAATGGCAAGCAGGAATCAGATGCTCAAGGGCTGATTGGCCATTATCAACTTTGAAAGCGAAGCCAACTCATGACAGGAAGAAGTATGTTGTCATATTTTTTCCTCACACAAGAATTTATTCTTGGGCAGATATTCTTCTTGTGTGCCCAATTAATAAGTTTCCACAGCCCATTGCACACAAGACACATAATGTTGGATTGGAAATGGTTAAAGATTTGACTATTGCACGCCGTTTTATCATGCAAAAGTTAGCTGTTGGCATGCTACATATCAGCGATCAATTACATATTGAGGCCCTGACAGAGAATGTTCGTAATGTGATGTCCTGGAAGGAATTTGCAATGGAAGCTTCCCGCTGTAAAGGGTATTCTGATCTTGGAAGAATGCTTCCAAGGCTTCAGAGTATGATATTGATGAACTACATAAGTCCTGACTGGGTACAACATTCTTTTCGATCTTGGGTAGAACGGTGTCATAGTGCAGATAGTGCTGAATCTGTTGAAATACTGAAGGAGGAATTGTTTGGTTCCATTCTGTGGAATGAAGTCAGCTCACTCTGGGATGCACCAGTGCAACCTGAGTTGGGTTCTGAGTGGAAGACCTGGAAGCATGAAGTTATGAAATGGTTTTCAACATCTCATCCCATCTCTAGCAGTGGAGACATAAAACAACAGAGCGGTGATAACCCCTTGACCTCAAGCCTCCAAATTAACAGGAAGAGGCCCAAGCTTGAAGTTCGTCGTGCAGAGACCCATGCTTCAGTGGTTGAGACAGGGGGTTTACATCAGGCTGTAACTGTCGACATTGATTCCGGATTTTTTGATAGTCGAGATATAGTGCATGATGCTCCATCAGCATCTGAACCTTATAAGGAGGAAGTTTTTGGGGAGGGAGCTGTAACAACAAATTCTCCAGGTAGTGCCACTGATAGATGGAATGAAATTGTAGTTGAATCTGGAAATCCAGAACTTTTCCAAACCAAAGATGTGGAAATGACACCTGTGAGTGAGGTGGTTGCTAAGAAATCCTTGGATCCTGGGAACAAAAATCGCCAATGTATAGCTTTTATTGAAGCAAAAGGTAGACAATGTGTGAGGTGGGCAAATGATGGTGATGTGTATTGTTGTGTGCATTTGGCCTCTCGTTTTGTGGGGAACTCTGCAAAAGCAGATGTAGCTCCCCCTGTTGATATGCCAATGTGTGAAGGTACCACAACTCTTGGCACTCGATGCAAGCATCGGTCTCTCTATGGCTCCTCATTCTGTAAGAAACACAGACCCCAGAGTGACACAAAAAGGACCTTGACTTCACCAGAGAATAAACTTAAGAGAAAACATGAGGAGAATATATCAATTTCAGAAACCACACTATGTAAAGATATAATATTGGTGGGTGAAGTTGAAAACCCTCTCCAAGTGGATCCGATATCAGTTGTGAAGGGAGACAACTTTGAGAGAAAACATAACTTGATTGAGAATCCTGAGTATTCTAGTAAAGGGTATATGAACGCAGAGGTACTGCACTGCATTGGCTCACGCCCTGAAGATGGTGGTGATCCTTGCTTGGAAAGTCCAAAGCGACATTCATTGTACTGTGAAAAACACCTTCCGAGCTGGCTTAAACGTGCTAGGAATGGTAAAAGCAGAATAATTTCAAAAGAAGTGTTTATAGATCTTTTAAGAAATTGCTGTTCACAGGAGCAAAAATTGCATTTGCATCAAGCATGTGAGCTTTTCTACAGACTCTTCAAAAGTATTCTGTCCTTGAGAAACCCAGTTCCTAGGGAAGTCCAACTTCAATGGGCACTGTCTGAAGCTTCTAAAGAATCTGGTGTTGGGGAATTCTTGACAAAGTTGGTTTGCAGTGAAAAAGATAAGCTCATGAGACTCTGGGGCTTTAATGCTGATACTGATGTACAAGTTTCCTCCTCTGTAATGGAAGAAGCAGTTCCTGTTCCGGTAGCCATTGTGAGTGGCTGTGATACTGAAAAGACCATTAAGTGCAAAATTTGCTCAGAGGAGTTTCCTGATGACCAAGCAATAGGCAAACACTGGATGGACAATCATAAAAAGGAATCTCAATGGTTGTTCAGAGGTTATGCTTGTGCCATCTGCCTGGATTCTTTTACAAACAGGAAAGTTCTGGAAAGTCATGTGCAGGACAGACACCATGTTCAGTTTGTTGAACAATGCATGCTTTTCCAGTGTATTCCTTGTGGCAGCCATTTTGGGAATACGGAAGCATTGTGGTTGCATGTGGTCTCAGTTCATCCTGTTGATTTTAGGCTGTCAACAGTTACTCAACAGCATAATGTGTCTGCAGGTGAAGATTCTCCACAGAAACTTGAGCTGGGTGCTTCAGCTTCTATGGAGAATCACACTGAGGGTCAAGGTGGTTTCCGGAAGTTCATTTGTAGGTTTTGTGGGTTGAAGTTTGATCTGCTTCCTGATCTTGGCCGCCACCATCAAGCTGCTCATATGGGGCCAAATCTAGTTAGCTCTCGCCCTGGAAAGAAGGGGGTTCGTTATTATGCTTATAGATTAAAATCAGGGAGGCTTAGCCGTCCTAGATTTAAGAAAGGCCTAGGAGCAGCATCATTTAAGATCAGAAACAGGAGCACTGCTAATATGAAGAAACGCATCCAGGCATCTACTTCAACCAGTTCTGGGGGACTAAGAGCACCTTCTCATGTAACTGAGCCAGTGAGCCTTGGTAGATTGGTGGAATCTCAATGCTCTGATGTTGCAAAGATATTATTCTCTGAGATTCAGAAAACAAGATCCCGACCCAGTAACCTTGATATTTTGTCCATTGCTCGCTCAACTTGCTGTAAGGTAAACCTCCAAGCATTACTGGAGGGGAAGTATGGAGTTTTGCCAGAACGGTTGTATCTGAAGGCGGCCAAACTCTGTAGTGAACATAATATTCAAGTGAGCTGGCATCAAGATGGGTTTGTTTGCCCTAATGGATGCAAACCTGTGTCAAACGCACATTTACCGTCTCTGCTGATGCCACACTCAAATGGTTCTATTGGGCATGGCTCTGCATCATTAGATCCTGTGAGTGAGGAGTGGGAAATGGATGAGTGCCATTATGTCATTGATTCACGTCATTTTGGAAACACACTCCTGCAAAAAGATGTCGTTGTGTGTGATGATATAAGCTTTGGTCAGGAATCAGTTCCAATTGCCTGTGTAGTGGATGAGGATCTTCTGGACTCCCTTCACATCCTTGCAGATGGTTCTGATGGCCAAATCACCAGATACTCCATGCCTTGGGAGAGCTTTACCTATGTCACAAAGCCATTGCTTGACCAGTCCCTTGGTCTTGATGCAGAGAGTTGGCAATTGGGTTGTGCTTGTCTACACTCAACTTGCTCTCCTGAAAGATGTGATCACGTATACCTCTTTGATAATGACTATTCAGATGCAAAGGATATATATGGGAAACCCATGAGTGGCAGATTCCCATATGATGAAAAAGGACGGATTATCTTGGAGGAGGGTTACCTTGTCTATGAGTGCAATGGCAAGTGCAGCTGCAACAGAACATGTCAGAATAGGGTTTTGCAGAATGGAGTGCGAGTAAAGTTGGAAGTCTTTAGAACAGAGGAAAAGGGTTGGGCAGTCAGGGCAGGTGAAGCAATCCTTCGGGGTACGTTCATATGTGAGTACATTGGAGAGGTTTTAAGTGAGCAAGAAGCAGACAAGAGGGGCAACAATAGGCATGGTGAAGAAGGTTGCAGCTATTTTTATGACATCGACTCTCATATCAATGATATGAGCAGATTGGTAGAAGGACAGGTTCCTTATGTAATTGATGCTACAAGATATGGAAATGTTTCACGGTTCATCAATCACAGCTGCTCACCAAACCTCATTAATCACCAAGTTCTTGTGGAAAGCATGGATTGTCAGCTTGCACATATTGGTCTCTTTGCAAATCGAGATATATCTTTGGGTGAAGAACTGACGTATGATTATCGATATAAACCACTGCCTGGAGAAGGATACCCATGTCATTGTGGAGCTTCCAAGTGCCGTGGTCGTCTTCACTAG 4554 0.4321 MEVLPCSGVQYVGESDCPQQSPGTTFIYDGDSNCVEHGQQVQLADDKMDKLLLNAERSQKEKKGEVEGRVEELPTSEGHCSGALYFDCEVEDQKQPCNSLYFEDGNLNVQNGCTEPCLASDSSHLIVDTIESELPSNTGEGELSVSEPKWLEQDETVALWVKWRGKWQAGIRCSRADWPLSTLKAKPTHDRKKYVVIFFPHTRIYSWADILLVCPINKFPQPIAHKTHNVGLEMVKDLTIARRFIMQKLAVGMLHISDQLHIEALTENVRNVMSWKEFAMEASRCKGYSDLGRMLPRLQSMILMNYISPDWVQHSFRSWVERCHSADSAESVEILKEELFGSILWNEVSSLWDAPVQPELGSEWKTWKHEVMKWFSTSHPISSSGDIKQQSGDNPLTSSLQINRKRPKLEVRRAETHASVVETGGLHQAVTVDIDSGFFDSRDIVHDAPSASEPYKEEVFGEGAVTTNSPGSATDRWNEIVVESGNPELFQTKDVEMTPVSEVVAKKSLDPGNKNRQCIAFIEAKGRQCVRWANDGDVYCCVHLASRFVGNSAKADVAPPVDMPMCEGTTTLGTRCKHRSLYGSSFCKKHRPQSDTKRTLTSPENKLKRKHEENISISETTLCKDIILVGEVENPLQVDPISVVKGDNFERKHNLIENPEYSSKGYMNAEVLHCIGSRPEDGGDPCLESPKRHSLYCEKHLPSWLKRARNGKSRIISKEVFIDLLRNCCSQEQKLHLHQACELFYRLFKSILSLRNPVPREVQLQWALSEASKESGVGEFLTKLVCSEKDKLMRLWGFNADTDVQVSSSVMEEAVPVPVAIVSGCDTEKTIKCKICSEEFPDDQAIGKHWMDNHKKESQWLFRGYACAICLDSFTNRKVLESHVQDRHHVQFVEQCMLFQCIPCGSHFGNTEALWLHVVSVHPVDFRLSTVTQQHNVSAGEDSPQKLELGASASMENHTEGQGGFRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVSSRPGKKGVRYYAYRLKSGRLSRPRFKKGLGAASFKIRNRSTANMKKRIQASTSTSSGGLRAPSHVTEPVSLGRLVESQCSDVAKILFSEIQKTRSRPSNLDILSIARSTCCKVNLQALLEGKYGVLPERLYLKAAKLCSEHNIQVSWHQDGFVCPNGCKPVSNAHLPSLLMPHSNGSIGHGSASLDPVSEEWEMDECHYVIDSRHFGNTLLQKDVVVCDDISFGQESVPIACVVDEDLLDSLHILADGSDGQITRYSMPWESFTYVTKPLLDQSLGLDAESWQLGCACLHSTCSPERCDHVYLFDNDYSDAKDIYGKPMSGRFPYDEKGRIILEEGYLVYECNGKCSCNRTCQNRVLQNGVRVKLEVFRTEEKGWAVRAGEAILRGTFICEYIGEVLSEQEADKRGNNRHGEEGCSYFYDIDSHINDMSRLVEGQVPYVIDATRYGNVSRFINHSCSPNLINHQVLVESMDCQLAHIGLFANRDISLGEELTYDYRYKPLPGEGYPCHCGASKCRGRLH* 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1053 1517 SMART preset_2 1216 1345 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi4g1053 1517 ProSiteProfiles SET domain profile. 1361 1494 IPR001214 GO:0005515
Vvi4g1053 1517 Gene3D Classic Zinc Finger 821 891 - -
Vvi4g1053 1517 ProSiteProfiles Pre-SET domain profile. 1282 1358 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi4g1053 1517 SMART c2h2final6 831 854 IPR013087 -
Vvi4g1053 1517 SMART c2h2final6 899 922 IPR013087 -
Vvi4g1053 1517 SMART c2h2final6 865 888 IPR013087 -
Vvi4g1053 1517 SMART c2h2final6 968 991 IPR013087 -
Vvi4g1053 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 899 922 IPR013087 -
Vvi4g1053 1517 SUPERFAMILY SET domain 1206 1507 IPR046341 -
Vvi4g1053 1517 Pfam SET domain 1372 1493 IPR001214 GO:0005515
Vvi4g1053 1517 Pfam Pre-SET motif 1219 1353 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi4g1053 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 833 854 IPR013087 -
Vvi4g1053 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 901 922 IPR013087 -
Vvi4g1053 1517 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1517 - -
Vvi4g1053 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 968 996 IPR013087 -
Vvi4g1053 1517 ProSiteProfiles Post-SET domain profile. 1501 1517 IPR003616 -
Vvi4g1053 1517 MobiDBLite consensus disorder prediction 588 607 - -
Vvi4g1053 1517 Gene3D SET domain 1207 1517 IPR046341 -
Vvi4g1053 1517 Coils Coil 41 61 - -
Vvi4g1053 1517 Pfam Zinc finger C2H2-type, 3 repeats 867 992 IPR040689 -
Vvi4g1053 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 865 888 IPR013087 -
Vvi4g1053 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 970 991 IPR013087 -
Vvi4g1053 1517 SMART set_7 1361 1500 IPR001214 GO:0005515
Vvi4g1053 1517 MobiDBLite consensus disorder prediction 590 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1053 Vvi-Chr4 17400740 17415696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1053 138 1516 C2H2 Transcription Factor Family AT2G23740 53.314 0.0 1446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi4g1053 Pre-SET 7.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1053 - - vvi:100251309 3137.82