Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1052 ATGAGGCTCATCTATGGGACAACAGTTGCAGAAGAGGACAAACTCGAAAGGGAAGGCAAGGAATGGAAGAGTAGCGGGTTTTCTCGTGGAGTATCCATATATAGAGGAGTGATCAGACACCACCAGCATGGGAGATGGCAGGCAAGGATTGGAAGAGTTGCAGGCAACAAAGATCTTGACTTGGGAACTTTCAGCACCCAGGAGGAAGCAGCAGAGGTCTATGACATTGCTGCCATTAAGTTCCAACATTTGAATGCGGTGACTAACTTTGACATGAGTAGATATGATGTTAATAGCATCCTAGAGAGCAGTACATTGCCGATTTTTAGCTGCGAAGTTGTTCAAAGATGCTGA 354 0.4548 MRLIYGTTVAEEDKLEREGKEWKSSGFSRGVSIYRGVIRHHQHGRWQARIGRVAGNKDLDLGTFSTQEEAAEVYDIAAIKFQHLNAVTNFDMSRYDVNSILESSTLPIFSCEVVQRC* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1052 117 SUPERFAMILY DNA-binding domain 32 93 IPR016177 GO:0003677
Vvi4g1052 117 CDD AP2 32 93 IPR001471 GO:0003700|GO:0006355
Vvi4g1052 117 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 106 - -
Vvi4g1052 117 Pfam AP2 domain 33 80 IPR001471 GO:0003700|GO:0006355
Vvi4g1052 117 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Vvi4g1052 117 SMART rav1_2 33 97 IPR001471 GO:0003700|GO:0006355
Vvi4g1052 117 ProSiteProfiles AP2/ERF domain profile. 33 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1052 Vvi-Chr4 17388144 17390306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1052 27 96 AP2-EREBP Transcription Factor Family AT3G20840 34.615 5.57e-09 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi4g1052 AP2 2e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1052 K09285 - ming:122085209 160.999