Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1050 ATGGCTTCCATGAACAACTGGTTGGGTTTCTCTTTGTCCCCTCGAGAACTTCCACCACAGCCTGAAAATCACTCACAGAACAGTGTCTCTAGACTTGGTTTCAACTCTGATGAAATCTCTGGGACTGATGTGTCAGGTGAGTGTTTTGATCTCACTTCAGATTCCACTGCTCCCTCTCTCAACCTCCCTCCCCCTTTTGGGATACTTGAAGCATTCAACAGGAATAATCAGCCCCAAGATTGGAACATGAAGGGTTTGGGCATGAATTCAGATACTAACTACAAAACCACCACTTCTGAGCTCTCCATGCTCATGGGTAGTTCATGCAGTAGTCATCATAACCTCGAAAACCAAGAACCCAAACTTGAAAATTTCCTGGGCTGCCGCTCTTTTGCTGATCATGAGCAGAAACTTCAAGGGTGTAACTCCATTGCAGCAGCAGCTTATGATAGCTCTGCAGACTACATGTTCCCCAACTGCTCACTGCAGCTTCCATCTGAGCCGGTAGACACCCCCACTCCCCGCGGTGGCGGCGGTGGAAGCACTACCGTCAACAATAGTTCCATTGGTTTATCCATGATCAAGACATGGCTGCGGAACCAACCTGCACCCACCCATCAGGATAACAACAAGAGTACTGATACTGGGCCTGTCGGTGGAGCCGCCGCTGGGAACCTACCCAATGCACAGACCTTATCGTTGTCCATGAGCACCGGCTCGCAGTCCAGCTCTCCTTTGCCTCTCCTAACAGCGAGTGCAGGTGGTGGTGGTGGGAGTGGAGGAGAGAGTTCTTCATCAGATAACAAGAAGGCCACCCCCCTCGATAGCCAGACCGGTGCCATTGAAACGGTGCCAAGGAAGTCCATTGATACATTTGGACAGAGGACATCCATATACCGTGGTGTAACAAGGCATAGATGGACGGGTAGATATGAGGCTCATCTATGGGACAACAGTTGCAGAAGAGAAGGACAAACTCGAAAGGGAAGGCAAGGTGGTTATGACAAAGAAGAAAAGGCAGCTAGGGCTTACGATTTAGCAGCACTGAAGTATTGGGGTACCACCACCACAACAAATTTCCCTATTAGCAACTATGAAAAAGAGATAGAGGAGATGAAGCACATGACAAGGCAGGAGTACGTAGCATCTCTGCGAAGGAAGAGTAGCGGGTTTTCTCGTGGAGCATCCATATATAGAGGAGTGACCAGACACCATCAGCACCCAAGAGGAAGCAGCAGAGGCCTATGA 1248 0.4952 MASMNNWLGFSLSPRELPPQPENHSQNSVSRLGFNSDEISGTDVSGECFDLTSDSTAPSLNLPPPFGILEAFNRNNQPQDWNMKGLGMNSDTNYKTTTSELSMLMGSSCSSHHNLENQEPKLENFLGCRSFADHEQKLQGCNSIAAAAYDSSADYMFPNCSLQLPSEPVDTPTPRGGGGGSTTVNNSSIGLSMIKTWLRNQPAPTHQDNNKSTDTGPVGGAAAGNLPNAQTLSLSMSTGSQSSSPLPLLTASAGGGGGSGGESSSSDNKKATPLDSQTGAIETVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHPRGSSRGL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1050 415 Gene3D AP2/ERF domain 298 363 IPR036955 GO:0003700|GO:0006355
Vvi4g1050 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 112 412 - -
Vvi4g1050 415 MobiDBLite consensus disorder prediction 11 36 - -
Vvi4g1050 415 Pfam AP2 domain 298 353 IPR001471 GO:0003700|GO:0006355
Vvi4g1050 415 ProSiteProfiles AP2/ERF domain profile. 298 361 IPR001471 GO:0003700|GO:0006355
Vvi4g1050 415 SUPERFAMILY DNA-binding domain 297 363 IPR016177 GO:0003677
Vvi4g1050 415 CDD AP2 297 363 IPR001471 GO:0003700|GO:0006355
Vvi4g1050 415 MobiDBLite consensus disorder prediction 201 281 - -
Vvi4g1050 415 PRINTS Ethylene responsive element binding protein signature 299 310 IPR001471 GO:0003700|GO:0006355
Vvi4g1050 415 PRINTS Ethylene responsive element binding protein signature 343 363 IPR001471 GO:0003700|GO:0006355
Vvi4g1050 415 MobiDBLite consensus disorder prediction 166 186 - -
Vvi4g1050 415 MobiDBLite consensus disorder prediction 257 281 - -
Vvi4g1050 415 MobiDBLite consensus disorder prediction 18 36 - -
Vvi4g1050 415 MobiDBLite consensus disorder prediction 395 415 - -
Vvi4g1050 415 MobiDBLite consensus disorder prediction 226 249 - -
Vvi4g1050 415 MobiDBLite consensus disorder prediction 400 415 - -
Vvi4g1050 415 SMART rav1_2 298 367 IPR001471 GO:0003700|GO:0006355
Vvi4g1050 415 FunFam AP2-like ethylene-responsive transcription factor ANT 297 363 - -
Vvi4g1050 415 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1050 Vvi-Chr4 17380960 17384275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1050 188 413 AP2-EREBP Transcription Factor Family AT5G17430 62.771 1.16e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi4g1050 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1050 K09285 - vvi:100241060 781.556