Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1048 ATGCAATACCGTCCATTATCAAAGGTTCATTTATTGTGTGAAGCCCATTTGTTGGAGTTCCATACGTTTATATCCAACTATGGTCAGCCTACCCAACTCTACGCTATGCCTGCTTTCCTGGCGTTTTCTTCTTCAGAAACCGCAGCTTCCAGTGGGTCGTTTCGGAACTCAAAAATGCCGAAGCAGATCCATGAGATTAAGGATTTCCTTCTTACAGCAAGAAGGAAGGATGCTCGATCTGTCAAAATCAAGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTAGGTGCTCCAAGTACCTTTACACACTGTGTGTGTTTGACTCAGAGAAGGCTGACAAATTGAAGCAATCTCTTCCTCCAGGTTTGAGTGTGCAGGACCTGTGA 384 0.4401 MQYRPLSKVHLLCEAHLLEFHTFISNYGQPTQLYAMPAFLAFSSSETAASSGSFRNSKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1048 127 FunFam 60S ribosomal protein L38 59 127 - -
Vvi4g1048 127 Gene3D - 59 127 IPR038464 -
Vvi4g1048 127 Pfam Ribosomal L38e protein family 60 126 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vvi4g1048 127 PANTHER 60S RIBOSOMAL PROTEIN L38 59 126 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1048 Vvi-Chr4 17354673 17357525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1048 59 127 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 95.652 3.30e-44 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1048 K02923 - mnt:112094472 142.124