Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1029 ATGGCCATGGCCAGTTTCTATTTGTTCTCTTCTTCACTTTGCATGCTTTTTAGCTTTGTGGTATTCACTGAAGCAGCCCCTAAAGGGTCTCTCATCACACACCTTCCTGGGTTCAATGGAATTTTCCCTTCCAAGCACTACTCAGGTTATGTGGACATAGGAGGTGAACCTGCCAAGAATCTGTTTTACTACTTTGTTGTATCCGAAAGAAACCCAGCGAAGGATCCTCTTGTTCTATGGCTGAATGGTGGCCCAGGCTGCTCTAGCTTTGATGGTTTTGTGTATGAACATGGACCTTTCAATTTTGAAGCAGGAAAGACACCCATCAGCCTGCCCACTTTGCACCTCAACCCATACAGTTGGTCCAAGGTTTCAAGCATGATATATTTGGACTCTCCTACTGGGGTTGGGTTTTCCTTCTCGAAAAACACATGGCAATACAAAACTGGAGACGTTCAAACTGCCTCTGATACACATGAGTTTCTCCTCAGGTGGTTCAAAGAATTCCCGGAATTCATCACCAATCCATTTTATGTGTCTGGAGAGTCTTATGCTGGAGTTTATGTGCCAACTCTTTCTGCTGCAATAGTGAAAGGCATCAAAAGTGGTGCAAAGCCTACTATCAACTTCAAGGGCTATTTGGTGGGAAATGGGGTCACAGACATGGAGTTTGATGCCAATGCCCTAGTCCCATTTACACATGGGATGGGCCTTATATCAAGTGAGATGTTTGAGGTACTGAATTTTATTAGCTACTTTCAGCTTAGTTCTTGCTTGAAAGCATCTCAAATAGTTCCAAAACAACTGGTGCAGAAAGCAAGAGATAACTGTGGAGGAAACTATTACTCAAATGAAAGTAAAAGCTGCATAGAAGAGCTGAACAAAATCTATAATGCCATTTCTGGCCTCAACCAATACGATATCCTTGAACCTTGCTATCATAGACCGACGAAGAAAGGTGAAGAAACTGGAAATACAACACTACCACTTAGCTTCAAGCAGTTAGGAGCTACTAACCGGCCACTTCCAGTGAGGACGAGGATGTTTGGCCGCGCCTGGCCTTTTCGTGCACCAGTTAAAGATGGCATTCTCCCTCTGTGGACTGAATTAATCAAGCAAAACCCAATTCCTTGCACGGATGATCAAGTAGCAAGTGCTTGGTTGAATGACAAAGGAGTTAGGACTGCAATTCATGCCCAACAGAAAGATGTGATTGGGGAGTGGGAAATATGCACTGGCAGACTACACTATTCCTCTGACTCTGGGAGTATGCTTCAGTACCACAAAAACCTAACTGCCAAGGGATACCGAGCACTTATATACAGTGGGGATCATGATATGTGTGTGCCATTCACTGGGAGCGAAGCATGGACAAGGTCACTCGGATATAAGATTGTGGATGAATGGAGGGCTTGGATTTCCAATGACCAAGTTGCCGGGTACACACAAGGATATGAACATGGCCTCACCTTTCTCACCATCAAGGTCAGTCTTGTATACATTCTGTTGATTTTTTTCTGA 1521 0.4405 MAMASFYLFSSSLCMLFSFVVFTEAAPKGSLITHLPGFNGIFPSKHYSGYVDIGGEPAKNLFYYFVVSERNPAKDPLVLWLNGGPGCSSFDGFVYEHGPFNFEAGKTPISLPTLHLNPYSWSKVSSMIYLDSPTGVGFSFSKNTWQYKTGDVQTASDTHEFLLRWFKEFPEFITNPFYVSGESYAGVYVPTLSAAIVKGIKSGAKPTINFKGYLVGNGVTDMEFDANALVPFTHGMGLISSEMFEVLNFISYFQLSSCLKASQIVPKQLVQKARDNCGGNYYSNESKSCIEELNKIYNAISGLNQYDILEPCYHRPTKKGEETGNTTLPLSFKQLGATNRPLPVRTRMFGRAWPFRAPVKDGILPLWTELIKQNPIPCTDDQVASAWLNDKGVRTAIHAQQKDVIGEWEICTGRLHYSSDSGSMLQYHKNLTAKGYRALIYSGDHDMCVPFTGSEAWTRSLGYKIVDEWRAWISNDQVAGYTQGYEHGLTFLTIKVSLVYILLIFF* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1029 506 FunFam Carboxypeptidase 25 335 - -
Vvi4g1029 506 Pfam Serine carboxypeptidase 36 495 IPR001563 GO:0004185|GO:0006508
Vvi4g1029 506 Gene3D alpha/beta hydrolase 25 335 IPR029058 -
Vvi4g1029 506 Gene3D - 375 497 - -
Vvi4g1029 506 FunFam Carboxypeptidase 375 497 - -
Vvi4g1029 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 495 IPR001563 GO:0004185|GO:0006508
Vvi4g1029 506 SUPERFAMILY alpha/beta-Hydrolases 32 495 IPR029058 -
Vvi4g1029 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Vvi4g1029 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vvi4g1029 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vvi4g1029 506 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1029 Vvi-Chr4 17038120 17060712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1029 383 495 Calmodulin-binding Proteins AT2G22960 51.327 3.92e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1029 K16296 - vvi:100242709 954.896