Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1028 ATGGGGTCCTGCTTGTCTGCTGAAAGCAGTCGCCCTCTCCCCAGTTCGCCCTCGGGTTCTTTAGGGGTCAGGAGGAGGAAGAACTCCAAGAGACGACTGGGGTCTCGGACTTCCTCCTTCGACTCCAGGAGGGAAGAACAATTGCATAAGATTCCAGGGCGAATGTTCCTGAATGGGGCGAGTGATTTCGCCTCTTTGTTTACACAGCAGGGCAAGAAAGGAACCAACCAGGATGCCATGATTGTTTGGGAGAATTTTGGTTCAAGAACAGACACGGTTTTCTGTGGCGTTTTTGATGGCCATGGTCCATATGGTCATATGGTTGCAAAGAGGGTGAGGGATTCCCTTCCCCTAAAACTGAGTGCACACTGGGAAGTCAATATCAATGAGGATGTACTCAAAGAGATCAGCCTTAACACCACCGGAAGCATGAACTCCGAAGATACTGCCTTCATATCTGCCGATGAGGAATCCAGGCCCTCTATTGATCTTGAAGAAACAGAAAAGCAGCCTGAGATCTTTCAGGCACTGAAAGAATCATTTCTGAAGGCTTTCAAAGTCATGGACAGGGAGCTGAGAATGCATACAAATATAGATTGCTTCTGTAGTGGGACAACAGCGGTTACTCTGGTCAAGCAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGGGCTGTATTGGGTACCAGAGATAAGGACGGTTATCTTGTTGCCATTCAGTTGACCGTCGATCTCAAACCAAATCTTCCAGGGGAAGCAGAGAGAATTCGAAGATTCAAAGGGCGTGTTTTTGCCCTTCAGGATGAACCTGAGGTTGCCAGAGTCTGGCTGCCAAACAATGATTCCCCTGGTCTTGCCATGGCCCGGGCTTTCGGAGATTTCTGCCTCAAGGATTTTGGTCTGATCTCTGTGCCTGAAATTTCTTATCGGCGCCTCTCTGAGAAGGATGAATTTGTCGTCTTGGCTACAGATGGGGTCTGGGATGTGCTCTCCAACAAAGAAGTGGTAGACATTGTAGCTTCGGCCTCATCGCGTTCCACTGCAGCTCGAACCCTGGTTGAGACTGCAGTAAGAGCTTGGAGGCTCAAATACCCAACTTCCAAAGTTGATGACTGTGCTGTAGTTTGCCTCTTCCTCAATTCCAACACAAACAATTTTTCTACTGCTTCCACCAAATCCAAAGAGCAGGTGACACCATTGGAACAAACGGACGCTGGCATTGAGAAAGATCTCTTAGGCCCGACTGGATTGGACCGCTCAGGAACTGTTCGAACGGGCAAAGAGATCCATCCAGAAGATAGCCAAGAGGAAGCATCAAAGCAGGAAGAGTTTCATACGGAGTCAGGCATAGAATGGTCTGCTCTTGAGGGAGTGTCTCGGGTAAACACCCTTCTGACTCTGCCAAGGTTTGTGCCTGGAAAAGATGACAAAAAAGTCTCTGGAAAAACCTCCTAA 1461 0.4867 MGSCLSAESSRPLPSSPSGSLGVRRRKNSKRRLGSRTSSFDSRREEQLHKIPGRMFLNGASDFASLFTQQGKKGTNQDAMIVWENFGSRTDTVFCGVFDGHGPYGHMVAKRVRDSLPLKLSAHWEVNINEDVLKEISLNTTGSMNSEDTAFISADEESRPSIDLEETEKQPEIFQALKESFLKAFKVMDRELRMHTNIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRDKDGYLVAIQLTVDLKPNLPGEAERIRRFKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEISYRRLSEKDEFVVLATDGVWDVLSNKEVVDIVASASSRSTAARTLVETAVRAWRLKYPTSKVDDCAVVCLFLNSNTNNFSTASTKSKEQVTPLEQTDAGIEKDLLGPTGLDRSGTVRTGKEIHPEDSQEEASKQEEFHTESGIEWSALEGVSRVNTLLTLPRFVPGKDDKKVSGKTS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1028 486 Pfam Protein phosphatase 2C 150 360 IPR001932 -
Vvi4g1028 486 Gene3D - 61 384 IPR036457 -
Vvi4g1028 486 ProSiteProfiles PPM-type phosphatase domain profile. 63 381 IPR001932 -
Vvi4g1028 486 CDD PP2Cc 63 381 IPR001932 -
Vvi4g1028 486 MobiDBLite consensus disorder prediction 1 45 - -
Vvi4g1028 486 MobiDBLite consensus disorder prediction 1 23 - -
Vvi4g1028 486 MobiDBLite consensus disorder prediction 425 449 - -
Vvi4g1028 486 MobiDBLite consensus disorder prediction 412 449 - -
Vvi4g1028 486 FunFam probable protein phosphatase 2C 33 58 384 - -
Vvi4g1028 486 SMART PP2C_4 52 379 IPR001932 -
Vvi4g1028 486 SUPERFAMILY PP2C-like 63 383 IPR036457 -
Vvi4g1028 486 PANTHER PROTEIN PHOSPHATASE 41 379 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1028 Vvi-Chr4 17022569 17026360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1028 1 476 PP2C-type Phosphatase Gene Family AT3G02750 64.896 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1028 - - vvi:100246183 924.08