LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g1026	ATGTGTTTTTTTCTCAGCCTCACCTCTCCTTCGATCCCTCTTCGGTCTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAACATTTGCAGATGCAGTGGTCCAGATTTATCTGGATAATGCTGGTGATCTGGAACTTATCGCTAAAAGCATTGAATCTTCAGACCTTAACTTCTCTAGATACGGTGACACCTTTTTTGAGGTTGTCTTCACCGGAGGTCGCACACAACCTGGCACAACAAAGTCTGATGAGGGGGAGCGCCATCCTTACTCTATAATTGATTGTGAACCTAATCGTGTAGCTGTTTTACCATCTGTAATCTACATACAGAAGATTTTAAGGCGGAGACCATTTCTCATAAAGAATCTTGAAAATGTCATGCGAAGATTCCTCCAGTCATTGGAGCTTTTTGAGGAAAATGAGAGGAAGAAGCTGGCTATTTTCACAGCACTTACATTCTCTCAGAAGCTATCTGGGCTTCCACCAGAGACAGTGCTCCAACCACTGCTCAAGGATAATCTTGTGGCCAAAGGGCTAGTTCTCTCTTTTATAACAGACTTCTTCAAGGAATATCTGGTTGATAATAGCCTTGATGACTTGATTTCCCTCCTGAAAAGGGGAAAAATGGAGGACAATCTTCTTATCTTCTTCCCTTCTGCTAAGCGTTCTGCTGAAGGTTTCTCTGAGCATTTCACCAAAGAAGGGCTGGTCCCCTTGGTTGAATACAATGAAAAGAAGATCTTTGAGGTGAAACTGAAGGAAATGAAATCTGCATTAACAACCCAGATTGCAGATGATACTGATATATCTGAAGTAATAGAAACTGTGAAACAACGAGTTAAAGATGCTAAGCTACCAGACATTGAGGTTGTGCGAATCTTGTGGGATGTCATAATGGATGCAGTTCAGTGGTCTGGGAAAAACCAGCAGCAGAATGCCAATGCAGCTCTACGCCAGGTGAAAGCATGGGCAAAACTTCTGAACACCTTCTGCACCAATGGGAAGCTCGAACTAGAGCTGTTGTACAAAGTTCAGATCCAATGCTATGAGGATGCCAAGCTGATGAAGTTGTTTCCTGAAATTGTGAGGTCTCTCTATGACCAAGATGTGCTTGCTGAAGACACCATTCTTGTCTGGTTCCGCAGGGGAACAAACTCTAAGGGCCGGCAAACTTTCGTCAAGGCACTGGAGCCCTTTGTGAATTGGCTGGAGGAGGCCGAGGAAGAAGAATGA	1290	0.4481	MCFFLSLTSPSIPLRSWFMSSKERPTLGGTRIKTRKRNIAAPLDPATFADAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKSDEGERHPYSIIDCEPNRVAVLPSVIYIQKILRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALTFSQKLSGLPPETVLQPLLKDNLVAKGLVLSFITDFFKEYLVDNSLDDLISLLKRGKMEDNLLIFFPSAKRSAEGFSEHFTKEGLVPLVEYNEKKIFEVKLKEMKSALTTQIADDTDISEVIETVKQRVKDAKLPDIEVVRILWDVIMDAVQWSGKNQQQNANAALRQVKAWAKLLNTFCTNGKLELELLYKVQIQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILVWFRRGTNSKGRQTFVKALEPFVNWLEEAEEEE*	430

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g1026	429	Coils	Coil	139	159	-	-
	Vvi4g1026	429	Pfam	eIF4-gamma/eIF5/eIF2-epsilon	356	429	IPR003307	GO:0005515
	Vvi4g1026	429	PANTHER	BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN	20	429	-	-
	Vvi4g1026	429	FunFam	ARM repeat superfamily protein	261	429	-	-
	Vvi4g1026	429	ProSiteProfiles	W2 domain profile.	264	429	IPR003307	GO:0005515
	Vvi4g1026	429	Gene3D	-	271	425	-	-
	Vvi4g1026	429	SUPERFAMILY	ARM repeat	271	426	IPR016024	-
	Vvi4g1026	429	SMART	542_3	343	428	IPR003307	GO:0005515
	Vvi4g1026	429	CDD	W2_eIF5C_like	235	422	IPR043510	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g1026	318	425	Eukaryotic Initiation Factors Gene Family	AT2G34970	30.909	2.52e-08	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g1026	-		-	vvi:100259803	795.423