Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g1016 | ATGGGTACCTGTCTGCCCTCGGTGATTACAAACGCCATGCAAATCCTCAAGCTGCAACCTGTTCATATTAGAAATCAGTCTGATGTTCCAAGAGGCCATTTTGCAGTTTATGTGGGAGATACTCAGAAGAAGCGATTTGTGGTACCAATATCTTACTTGAATCATCCTTCATTCCAAGACTTGCTGCAGCAGGCCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGTCTTACAATTCCTTGCAAAGAAGAGACTTTTGTTGATCTTGCTTCTCGACTGAATCATCTGTGA | 294 | 0.432 | MGTCLPSVITNAMQILKLQPVHIRNQSDVPRGHFAVYVGDTQKKRFVVPISYLNHPSFQDLLQQAEEEFGFDHPMGGLTIPCKEETFVDLASRLNHL* | 98 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g1016 | 97 | Pfam | Auxin responsive protein | 24 | 92 | IPR003676 | GO:0009733 | |
| Vvi4g1016 | 97 | PANTHER | SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED | 22 | 94 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi4g1016 | Vvi-Chr4 | 16782060 | 16782353 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi4g1016 | 28 | 87 | Calmodulin-binding Proteins | AT5G20810 | 60.000 | 7.91e-19 | 75.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g1016 | K14488 | - | vvi:100266822 | 202.986 |