Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1010 ATGGGTATCCGTTTGCCTTCTGTGGTTCAAGCCAAGCAGATTCTCAAACTACAGTCACTTCTTTCTAGAAATCGTGCAGAGGTCCCTAAAGGCCATTTTGCAGTTTATGTTGGGGAAATCGAGAAGAAGCGATATGTGGTTCCAATATCTTACTTGAACCACCCTTCATTCAGATCCTTGCTTTGTCAGGCTGAGGAAGAATTTGGTTTCAATCATCCCATGGGTGGTCTCACCATTCCATGTGAGGAACATGCTTTTCTTGATCTCACTTCTCAACTACAGGCATCATGA 291 0.4364 MGIRLPSVVQAKQILKLQSLLSRNRAEVPKGHFAVYVGEIEKKRYVVPISYLNHPSFRSLLCQAEEEFGFNHPMGGLTIPCEEHAFLDLTSQLQAS* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1010 96 Pfam Auxin responsive protein 12 91 IPR003676 GO:0009733
Vvi4g1010 96 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 10 93 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1010 Vvi-Chr4 16755874 16756164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1010 4 91 Calmodulin-binding Proteins AT4G34750 44.211 1.84e-18 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1010 K14488 - vvi:100264992 195.282