Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1006 ATGGGTATCCGTTTACCCTCCATGGTTCAGGCCAAGCAGATCTTCAAACTACAGTCATATCTTTCCAGAAATCAAGCAGAGGTCCCAAAAGGATATTTTGCAGTGTACGTTGGAGAAGTTGAGAAGAGACGTCATGTGGTTCCAATTTCTTACTTGAACCACCCCTCATTTAGATCCTTGCTATGTCAGGCTGAGGAAGAATTTGGCTTCAATCATCCAATGGGTGGTCTCACAATTCCATGCAATGAAGATGCTTTCGCTGATCTCACTACTCGACTAAATGCATCATGA 291 0.433 MGIRLPSMVQAKQIFKLQSYLSRNQAEVPKGYFAVYVGEVEKRRHVVPISYLNHPSFRSLLCQAEEEFGFNHPMGGLTIPCNEDAFADLTTRLNAS* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1006 96 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 10 93 IPR003676 GO:0009733
Vvi4g1006 96 Pfam Auxin responsive protein 6 92 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1006 Vvi-Chr4 16733927 16734217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1006 4 96 Calmodulin-binding Proteins AT4G34750 40.777 7.42e-17 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1006 K14488 - vvi:100256454 197.978