Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1004 ATGGATGGCATGGATTCGACTAGAATAAATAGCGGGAGCATTGCGGAGAGGAGAGCCGCCAAGTTTGGCTTTGATGCTTCCATAATCAAAACGCCGCGTTTCAGGTGTTCCAGACTCTTGGCGTTGCCGGCGGCTCGGTCGCCGCCCCTCATTATACCTCCGGGCATCAGTCCCACCGTCTTGCTCGATTCTCCGATCATGCTCCCCAACACTCAGGCACAACTGTCTCCTACAACTGGAACTTTTCAAGTGCCTTCTCTCATTCATGAAGGTTCAGTAAATTCAGTGGCTCCTACTGTAGATGGTGATCAGGCCAATAACTTCAGTGCCTCCGGCAAGTTCAAATCACATGCAAATCCCATCTCTTTGCCATGCTTTTCTAGTATAGAAATTCAGGTTTCTTCCCCTTCCGATCTTGCTCAAAGTTTTGGGGCTGAAGTTCACTATCAAACTTGTGCTCCAACACATTCACCAGTGGGTTTCGAATTTGCCACAGAATTCTCTACAGAAGCTTCTGCTAAAAACTATGTGTTTGATTCTGCCACTGATGTAAAAGTTTCAAACACTATGATTTCTGATATACCTAGTGATCACATGTCTCAGCACAAGGAGCCTATCCACAGTGAGAATGTAGGGATGCATCACATTCCAGAAGAACAGAAAGGCACATACCCTTCCATGGGAATGGGAAGAACTTCAGAAGATGGATACAATTGGAGAAAATATGGGCAAAAAAGTATGAAAGGTAGTGAACATACAAGGAGCTATTATAAATGTACTCATCTAGATTGTCCAATGAGAAAAAAGGTACAACAATCACATGATGGTCAAATAACAGAAATTATCTATAAGGGTGGTCATAACCACCCAAAACCACTGCCTAGTCGTCGATCAGCTCTTGGATCCACACTTCCATTTAATGAGATGTCAGGTTTGGGGGAAGGTGGTGGATCTAGTGTCAGAGTTGAAGGTGGCTCAATTTGGAGAAACGTTCAACCAGGATCTAAGAATGATAGAGCTGGTTCTGATTGGAGGGCCAATGGTTTGGAGAGGACATCCTCAACATCTGCTGTAAGTGCGCTCTCCAACTCCTTATCAAACACAGGAGGAATATCCATGGGTATATTTGAATCAGCAGGAACCCCAGATCTTTCCTTAACAGTTGCTAGTCAAGATGATGGTGAAGATGGGGCTACTCAAGGAAGCATATCACTTGGAGATGATGCTGATGATGAAGGTTCTCAGTCAAAAAAAAGGACTGTACGTGAACCAAGGGTTGTTGTCCAAGTAGAGTGTGAATCGGACGTCCTTAATGATGGATATCGCTGGCGAAAGTATGGACAAAAAGTCGTCAAAGGCAATCTGCATCCTAGGAATTACTACAAGTGCACAAGCACTGGATGCTCAGTGAGGAGGCATGTGGAAAGAGCTTCCAACAATCAGAAATCCATAATTGCGACATATGAAGGAAAACACAATCATGAAGTGCCTGCAGCCAGAAACAGCAGTCATGTGAATTCAAGTGGTGGAAATTTGCCTTCAGCTGCTCCTGGTGCTCAATCAGCACTGGCTTTGCACAGGAATGCTAATGCCCCAAGGCCAGAAGCACTACTTCAAGATCTTGTCCCCCACTTTGACATAAAACCTGAATTCAGCAATCAGTATATAAGGCACAGTATGCTTGGGAACTTTGCTAATGATATGAAATTTGGTCCTTCCTCCCTTTATTCAATGCAGTTCCCTCCCCTGCAAAATACCATGCTTTATGCTCCTTTTGGACTGGATTCTAATAATGCTGATCCCCACCAACCTGGTTCAGTTGCTCCAGTAGCCCCAGATTTCCCAATTTCATTGCCATTGAATCTCCCCCCACCTGCAAATCTGGGTCTGCCTGGCTTTGACTTCAACAGTCATGGAAACCCGATTGGTCAAGTTGAGCCATATTTCGTGGGGCAGCAGCTTCAGGAGAACGATATGAGGTTCCTCCATCCTAAAGAGGAGAAGAAGGATGACATTGGTGATGCAACTACATCATGTTCATCATCAACAATATATCACTAG 2061 0.4469 MDGMDSTRINSGSIAERRAAKFGFDASIIKTPRFRCSRLLALPAARSPPLIIPPGISPTVLLDSPIMLPNTQAQLSPTTGTFQVPSLIHEGSVNSVAPTVDGDQANNFSASGKFKSHANPISLPCFSSIEIQVSSPSDLAQSFGAEVHYQTCAPTHSPVGFEFATEFSTEASAKNYVFDSATDVKVSNTMISDIPSDHMSQHKEPIHSENVGMHHIPEEQKGTYPSMGMGRTSEDGYNWRKYGQKSMKGSEHTRSYYKCTHLDCPMRKKVQQSHDGQITEIIYKGGHNHPKPLPSRRSALGSTLPFNEMSGLGEGGGSSVRVEGGSIWRNVQPGSKNDRAGSDWRANGLERTSSTSAVSALSNSLSNTGGISMGIFESAGTPDLSLTVASQDDGEDGATQGSISLGDDADDEGSQSKKRTVREPRVVVQVECESDVLNDGYRWRKYGQKVVKGNLHPRNYYKCTSTGCSVRRHVERASNNQKSIIATYEGKHNHEVPAARNSSHVNSSGGNLPSAAPGAQSALALHRNANAPRPEALLQDLVPHFDIKPEFSNQYIRHSMLGNFANDMKFGPSSLYSMQFPPLQNTMLYAPFGLDSNNADPHQPGSVAPVAPDFPISLPLNLPPPANLGLPGFDFNSHGNPIGQVEPYFVGQQLQENDMRFLHPKEEKKDDIGDATTSCSSSTIYH* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1004 686 FunFam WRKY transcription factor 424 498 - -
Vvi4g1004 686 Pfam WRKY DNA -binding domain 234 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 Pfam WRKY DNA -binding domain 438 495 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 ProSiteProfiles WRKY domain profile. 234 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 SMART WRKY_cls 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 SMART WRKY_cls 437 496 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 172 517 IPR044810 GO:0003700
Vvi4g1004 686 SUPERFAMILY WRKY DNA-binding domain 232 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 MobiDBLite consensus disorder prediction 327 357 - -
Vvi4g1004 686 MobiDBLite consensus disorder prediction 664 686 - -
Vvi4g1004 686 FunFam WRKY transcription factor 223 293 - -
Vvi4g1004 686 MobiDBLite consensus disorder prediction 385 423 - -
Vvi4g1004 686 Gene3D WRKY domain 422 498 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 Gene3D WRKY domain 226 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 ProSiteProfiles WRKY domain profile. 432 497 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g1004 686 SUPERFAMILY WRKY DNA-binding domain 430 497 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1004 Vvi-Chr4 16664476 16674564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1004 5 500 WRKY Transcription Factor Family AT5G56270 37.848 4.94e-81 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi4g1004 WRKY 1.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1004 K18835 - vvi:100253049 1343.56