Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1001 ATGGGGTTGATGTTGGAAAATGGCGTTGCAAACGACGCCGTTTATGTCCCTCCCTCCAACTTCTCCATGGTTGAAGAGAACATCTTCAGATCTGGCCTCCCCAGCCCCATCAATTTCCCCTTCCTCGAAACCCTGAATCTTCGATCCATCATATACTTGTGTCCTGAGCCATATCCGGAAGAAAACTGTAAATTTCTTCAATCTCAGAATATCCGCCTCTTCCAGTTTGGCATTGAAGGAAAGAAGGAGCCTCCTGTGGCAATGTCCACGGATACCATCTCAGAGGCTTTGAAAGTCTTAATGGATGTGAGAAATCATCCCATTCTGATCCATTGCAAACGCGGAAAGCACCGGACAGGCTGTCTTGTGGGTTGTTTGAGAAAATTGCAGAATTGGTGTTTGTCTTCTGTGGTTGAGGAGTACCAGCGCTTTGCAGGAGCAAAATCGAGGATCAACGATCTGAAGTTCATCGAGACATATGACATATTGAGTATGAGGCAAAGCCTTTACAGCATTATCTACAGGTACCAAGGGTATGGGTCGAACAAGAGGAGGTTGCTTTACAGAGGAGACGAGAATGTGCATAAGGCAAGGTTAGCTTCAATTTAG 609 0.4581 MGLMLENGVANDAVYVPPSNFSMVEENIFRSGLPSPINFPFLETLNLRSIIYLCPEPYPEENCKFLQSQNIRLFQFGIEGKKEPPVAMSTDTISEALKVLMDVRNHPILIHCKRGKHRTGCLVGCLRKLQNWCLSSVVEEYQRFAGAKSRINDLKFIETYDILSMRQSLYSIIYRYQGYGSNKRRLLYRGDENVHKARLASI* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1001 202 Pfam Tyrosine phosphatase family 15 165 IPR004861 -
Vvi4g1001 202 Gene3D Protein tyrosine phosphatase superfamily 15 164 IPR029021 -
Vvi4g1001 202 CDD PFA-DSP_Siw14 16 161 - -
Vvi4g1001 202 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 162 IPR029021 -
Vvi4g1001 202 ProSiteProfiles Dual specificity protein phosphatase domain profile. 20 175 IPR020422 GO:0006470|GO:0008138
Vvi4g1001 202 PRINTS Plant and fungal dual specificity phosphatase signature 71 85 IPR020428 GO:0016791
Vvi4g1001 202 PRINTS Plant and fungal dual specificity phosphatase signature 88 102 IPR020428 GO:0016791
Vvi4g1001 202 PRINTS Plant and fungal dual specificity phosphatase signature 15 32 IPR020428 GO:0016791
Vvi4g1001 202 PRINTS Plant and fungal dual specificity phosphatase signature 52 65 IPR020428 GO:0016791
Vvi4g1001 202 ProSitePatterns Tyrosine specific protein phosphatases active site. 110 120 IPR016130 GO:0016311|GO:0016791
Vvi4g1001 202 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 165 - -
Vvi4g1001 202 FunFam probable tyrosine-protein phosphatase At1g05000 14 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1001 Vvi-Chr4 16630135 16632757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1001 1 198 Protein tyrosine phosphatase (PTP) family AT3G02800 67.172 1.33e-97 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1001 K18045 - vvi:100247948 413.69