Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0996 ATGGAATTCGATGCCGGAATTCCGATGCCTAGAGGGCAAGTGACCGAGGGATCCTCCCTCTCGCCCTCGCTCAATCAAGATGCAATGTGGCAAATGAACTTGAGATCGAGTGAAACAATGGAGTCTGGACCTTATCCCGAGCGTCCGGGAGAACCAGACTGTTCTTACTACATCAGGACAGGATTATGTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTGGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAGTACTACTTGAAGACAGGAACTTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGGATGAGATTGACTGTGCTTATTATTTAAGAACTGGACAGTGCAAGTTTGGAAGTACATGTAAATTTCACCATCCTCAACCATCTAGTATGATGGTTTCATTGCGTGGTTCTCCTGTTTATCCTTCTGTTCCTTCTCCAACAACTCCTGGTCAGCAGTCATATGCTGGAGGGATCACAAACTGGCCCTTGTCAAGAGCATCTTTTATACCCAGCCCACGCTGGCAAGCTCCCTCAAGTTATGCACCTTTGATGCTACCTCAGGGAGTGGTATCAGTCCCAGGCTGGAATGCATATAGTGGTCAGTTGGGTTCACCTTCAGAGAGCCAGCAGCAAACAGGAGGAAACAATCAGATTTATGGAACTTCACGGCAGAGTGAACAACCAAATACAGGATCTCAAGGGACATTTTCTCCGTACCGGTCTGGCTCTGTTCCCATAGGATTTTATGCATTGCAGAGAGAGAATGTATTTCCTGAGAGACCTGGACAGCCTGAATGCCAGTTTTACATGAAAACTGGAGATTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCCAGAGAAAGACTGATCCCTACTCCGGATTGTGTTTTGAGTCCCATAGGCCTCCCTTTACGTCCGGGAGAACCTTTGTGCATTTTTTATTCTCGTTATGGGATCTGCAAATTTGGTCCAAGTTGCAAGTTTGACCACCCTATGGGAATCTTCGCATACAATCTGTCTGCATCATCTTCAGCTGATGCTCCAGTTGTTCGACGATTGTTGGGGTCATCATCAGGAAGTGCCGCATTAACTTTGTCATCAGATGGGCTTGTTGAAGCAGGCTCCACAAAGCCCAGGCGACTTTCACTGCCAGAGACAAGACAGATGCCTCCTGGTGATGATAATATTGATACAGAGGGATGA 1326 0.4661 MEFDAGIPMPRGQVTEGSSLSPSLNQDAMWQMNLRSSETMESGPYPERPGEPDCSYYIRTGLCRFGITCRFNHPPNRKLAIATARMKGEFPERMGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPDEIDCAYYLRTGQCKFGSTCKFHHPQPSSMMVSLRGSPVYPSVPSPTTPGQQSYAGGITNWPLSRASFIPSPRWQAPSSYAPLMLPQGVVSVPGWNAYSGQLGSPSESQQQTGGNNQIYGTSRQSEQPNTGSQGTFSPYRSGSVPIGFYALQRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPTPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFAYNLSASSSADAPVVRRLLGSSSGSAALTLSSDGLVEAGSTKPRRLSLPETRQMPPGDDNIDTEG* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0996 441 Gene3D - 126 175 - -
Vvi4g0996 441 SUPERFAMILY CCCH zinc finger 143 167 IPR036855 GO:0046872
Vvi4g0996 441 SMART c3hfinal6 346 373 IPR000571 GO:0046872
Vvi4g0996 441 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Vvi4g0996 441 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Vvi4g0996 441 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Vvi4g0996 441 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Vvi4g0996 441 SUPERFAMILY CCCH zinc finger 304 330 IPR036855 GO:0046872
Vvi4g0996 441 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Vvi4g0996 441 MobiDBLite consensus disorder prediction 412 441 - -
Vvi4g0996 441 MobiDBLite consensus disorder prediction 241 279 - -
Vvi4g0996 441 SUPERFAMILY CCCH zinc finger 96 122 IPR036855 GO:0046872
Vvi4g0996 441 SUPERFAMILY CCCH zinc finger 349 373 IPR036855 GO:0046872
Vvi4g0996 441 SUPERFAMILY CCCH zinc finger 53 76 IPR036855 GO:0046872
Vvi4g0996 441 Gene3D - 292 375 - -
Vvi4g0996 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Vvi4g0996 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 120 IPR000571 GO:0046872
Vvi4g0996 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 373 IPR000571 GO:0046872
Vvi4g0996 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Vvi4g0996 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 166 IPR000571 GO:0046872
Vvi4g0996 441 FunFam Zinc finger nuclease 2 47 124 - -
Vvi4g0996 441 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Vvi4g0996 441 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Vvi4g0996 441 PANTHER PROTEIN PHOSPHATASE RELATED 27 389 - -
Vvi4g0996 441 Gene3D - 47 125 - -
Vvi4g0996 441 MobiDBLite consensus disorder prediction 1 23 - -
Vvi4g0996 441 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Vvi4g0996 441 FunFam CCCH type zinc finger protein 298 383 - -
Vvi4g0996 441 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0996 Vvi-Chr4 16567940 16579411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0996 29 439 C2H2 Transcription Factor Family AT3G02830 64.748 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi4g0996 zf-CCCH 3.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0996 - - vvi:100254791 899.427