Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0988 ATGGTTTCTTTGCCTGGAGTGCTACCCATATGCCATTGGTCAAACAGATTTGCAGCTCCTGGGAATGCGAAGGCTTTGAATTGGAGGTCTCATGGGCAGAAGAGAAACATCGTCTGTGCTTGTATGGCGCCTCCCAGGAACTTGCGCACGGATGGATTTGCAGCCACAAAATTCAATGATTCATCTCATCTAAAGAATCCAAGTGTTGATGGAGACCGTGAGGATGATTCTGATGTTCTTGTTGAGTGTAGAGATGTGTATAAGTCATTTGGGGAGAAGCACATCTTGAGAGGTGTGAGTTTTAAGATTAGACATGGGGAAGCTGTTGGGATTATTGGGCCTTCTGGCACTGGGAAATCAACAGTTCTGAAGATTATTGCGGGACTTCTTGCTCCAGACAAGGGAGAGGTCTTAATCCGAGGTAGAAGGAGGCATGGTTTAATCAGTGACCAAGAGATATCTGGTCTTCGAATAGGCTTGGTCTTTCAGAGTGCTGCACTTTTTGATTCTTTAACTGTTCGTGAAAATGTTGGTTTCCTTTTATATGAAAACTCCAGCATGCCAGAGGATCAAATTCACGAGCTCGTTACAGAATCTTTGGCTGCTGTTGGATTGAAGGGCGTTGAGGAGCGGTTACCCTCTGAGTTGTCTGGTGGAATGAAGAAACGAGTTGCATTAGCTCGGTCTATTATTTTTGATACCACCAAGGATGCAATTGAACCAGAGGTGCTATTATATGATGAACCAACTGCTGGGCTTGATCCAATCGCATCTACTGTAGTTGAAGATCTCATCCGCTCTGTCCATTTAAAAGAGGAAGATGCACCTGGGAAGCTTGGGAAGATTGCATCATATGTAGTTGTCACTCATCAACATAGTACCATTAGAAGAGCCGTTGACAGGCTGTTGTTTCTTTATGATGGGAAAATCGTCTGGGAAGGAATGACTGATGAATTCACCACTTCAACAAACCCAATTGTTCAGCAGTTTGCGTCTGGGAGCTTGGATGGACCAATTAGATATTAG 1026 0.4415 MVSLPGVLPICHWSNRFAAPGNAKALNWRSHGQKRNIVCACMAPPRNLRTDGFAATKFNDSSHLKNPSVDGDREDDSDVLVECRDVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVLIRGRRRHGLISDQEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMPEDQIHELVTESLAAVGLKGVEERLPSELSGGMKKRVALARSIIFDTTKDAIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHLKEEDAPGKLGKIASYVVVTHQHSTIRRAVDRLLFLYDGKIVWEGMTDEFTTSTNPIVQQFASGSLDGPIRY* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0988 341 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 81 332 IPR003439 GO:0005524
Vvi4g0988 341 Gene3D - 68 333 IPR027417 -
Vvi4g0988 341 SMART AAA_5 105 309 IPR003593 GO:0016887
Vvi4g0988 341 CDD ABC_Org_Solvent_Resistant 81 330 - -
Vvi4g0988 341 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 27 341 - -
Vvi4g0988 341 Pfam ABC transporter 96 251 IPR003439 GO:0005524
Vvi4g0988 341 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524|GO:0016887
Vvi4g0988 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0988 Vvi-Chr4 16404888 16417338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0988 67 319 Calmodulin-binding Proteins AT2G36910 28.000 1.28e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0988 - - vvi:100246248 678.707