Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0960 ATGAGTTGCTTCCCTTGTTTCACGTCCAAGGTTAAGAAAACAAATAGCAAGGACGCCAATTCTAGATCTTCTAGTGAATCACCTCCTCATGGTGTGTATTTAACCTTCATGCAGTGCTTTGTACGTATAATTGACCTAGCTAAGGCCAGGAACAGAAATGAAACTCCAAAAGCCGACGGTGGACCTAATATTAATGTAAAAGCTTTCACTTTCTGGGAACTGGCCTCTGCAACGAAGAATTTCCGTCAAGAATGTCTACTGGGGGAAGGTGCATTCGGAAGAGTGTATAAGGGACAACTTGAGAACAGTGGGCAGGATGTTGCTGTGAAGCAACTAGACAGGAATGGATTGCATGGAAACAAGGAGTTCCTTCAGGAGGTTTCGATGCTGAGTCTCCTGGACCATGAAAATCTGGTCAATCTAGTTGGATACTGCGCTGATGGTGAGCAGAGGCTTTTGGTGTGTGAATACATGTCATTGGGTTCTCTGGTTGATCATCTGTTTGAGATGAAACCAGACCAAGAACCACTAAGCTGGCCTACAAGAATGAATTTAGCTCTAGGGGCTGCCAGAGGTGTCGAGTATTTGCACGAAAAGGCTAATCCCCCGGTTCTATACCGAGATTTAAAGTCGTCAAACATCTTGCTGTGTGGAGATTTCCATCCAAAACTCTCCACTTTCGGGCTGGGCAAGGCCAAGTCTGTTGGCGATAAGATGCAAGTGTCTCGGGTGATGGGGACTTATGGCTACTGTGCTCCTGAGTATTCAAGGGACAGTCAGTTTACTTTGAAGTCAGATATATACAGCTTCGGAGTCGTTCTACTAGAGCTCATCACCGGTCGAAAAGCCATCGACACGACTAGGCCAATGGATGAGCAAAATCTCGTTTCTTGGGCACAACCCAAGTTCAGGGACCCCAAAAAGTTCCCAGAAATGGCGGATCCCCTTCTCAAGAGGCGGTTTCCGGAGAAGAGCCTGAATCAAGCGGTGGCAATAGCAGCAATGTGTCTTCAAGAGGAGGCATCAGTGCGCCCCTTGATCAGCGACGTTGTAACAACCCTTAGCTTCCTTGTAGCGTCTAAAGAGGAAAATATGTGTGACACCACCCCTCTCCCAAGTCTTCCTCCGGCCGATAGTGGCCATGAAAAGGGCGGAGACAGCTCAGAACACACCTCTGATCATGAGGATGAAGGCAGCGATTGCAGCAAGAGCGGGTCACAGGAGGGGAGTGAAGAGGAGAGCGAAGAGGAACACCAGCACGATCATAACAGGCCGTCCCGGGATGGAAGTGAGCAGGGTGACCACGACAGTGGAGATGAGTGTCATAGCGCTGTGACGGGATCCAATGAATGGGGCTCAAATTCAAGCCATAACAGCAACAGCTTATGA 1389 0.4852 MSCFPCFTSKVKKTNSKDANSRSSSESPPHGVYLTFMQCFVRIIDLAKARNRNETPKADGGPNINVKAFTFWELASATKNFRQECLLGEGAFGRVYKGQLENSGQDVAVKQLDRNGLHGNKEFLQEVSMLSLLDHENLVNLVGYCADGEQRLLVCEYMSLGSLVDHLFEMKPDQEPLSWPTRMNLALGAARGVEYLHEKANPPVLYRDLKSSNILLCGDFHPKLSTFGLGKAKSVGDKMQVSRVMGTYGYCAPEYSRDSQFTLKSDIYSFGVVLLELITGRKAIDTTRPMDEQNLVSWAQPKFRDPKKFPEMADPLLKRRFPEKSLNQAVAIAAMCLQEEASVRPLISDVVTTLSFLVASKEENMCDTTPLPSLPPADSGHEKGGDSSEHTSDHEDEGSDCSKSGSQEGSEEESEEEHQHDHNRPSRDGSEQGDHDSGDECHSAVTGSNEWGSNSSHNSNSL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0960 462 SUPERFAMILY Protein kinase-like (PK-like) 66 377 IPR011009 -
Vvi4g0960 462 CDD STKc_IRAK 87 354 - -
Vvi4g0960 462 MobiDBLite consensus disorder prediction 442 462 - -
Vvi4g0960 462 MobiDBLite consensus disorder prediction 382 441 - -
Vvi4g0960 462 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Vvi4g0960 462 FunFam probable serine/threonine-protein kinase RLCKVII 53 157 - -
Vvi4g0960 462 ProSiteProfiles Protein kinase domain profile. 81 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0960 462 FunFam Serine/threonine-protein kinase PBS1 158 370 - -
Vvi4g0960 462 SMART serkin_6 81 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0960 462 MobiDBLite consensus disorder prediction 366 462 - -
Vvi4g0960 462 Pfam Protein tyrosine and serine/threonine kinase 85 353 IPR001245 GO:0004672|GO:0006468
Vvi4g0960 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vvi4g0960 462 Gene3D Phosphorylase Kinase; domain 1 65 157 - -
Vvi4g0960 462 Gene3D Transferase(Phosphotransferase) domain 1 158 367 - -
Vvi4g0960 462 PANTHER OS07G0668900 PROTEIN 3 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0960 Vvi-Chr4 15711212 15713817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0960 1 357 Glycoside Hydrolase AT3G07070 61.559 6.39e-162 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi4g0960 PK_Tyr_Ser-Thr 7.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0960 - - vvi:100251076 880.167