Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0959 ATGATGCAGCAACTGTGTTTAGCCCACAATGTCAAGCAGGTCCAAACTGCAGCTGAAGTTCTAGCTGATGCAGAGATGGGGGCGGTTGCTACAAAAGCCGGAGAACTAGGAGCAACCTGGATCATTCTGGATAGGCGGTTGAAGAAGGAAAGCGATTGCTGCCTGAAGCAACTGGACTGCAACGTCGTACTTATAGACCATGCCATCCCAAGGATCCTTAGGGCGGTTGATCCACCAAAATTAAGAAAACTTGCTACGAGGGAACTTCAAACCGATCCTACAGTAGCTGACATGCTTGGCATTATTCCTACTTATAATCTCGCTTATAATCCTGATTGCAACAGTCTAACAACCAGAAGCAGTCTCGGTTTAGATAGCCCTTGTAATGGAACGGATGCCTCATCCTTCATGTCCAATGACAAGGACAAGTTCAGTAAGGCCAGCCCTTCAGTTGCTGACCTCAAACCGGTTGGTTCCACTTTTCATCTGAACTCTCAGTACTTCCACCAAGTAGTGGAAGTGGAAGAAGAAAGATTTGACTTCACCCCTTCATACAGTAAATCTCAGCCATTGGCAATGGTGCCGAGATTAGACACTGTCCAGTCACCTCAAAAGTCACCAGCCTGCACGATGAAGGAGAAAACCAAGGCCTGCAATGCTCTTCCAAAGATCCAAAATGATGAGAACAGAGGTACTAGAAGATCAATTGATTCGCCGCGCATGTGGAGAAACTTGGGGAGTCCAAAGCAATCAACTCAGCTGACTACCAGAAGAGACTCTATGGCTACCAACAGAATTGAACCAATCACGTCTCCTCTTTCTTCAACCATCGACAGAACTTCAAGCATCAGAAAAACCATGTCACTTTCCATCAAACACCCACCCACTCCCCCACCCCTTTGCTCAGTTTGCAAGCACAATGCTCCAATTTTTGGCAAGGCACCAAGGAAATTCGACTACAAAGAAATCATCAAAGCAACAGATGGGTTTTCGAGGCAGAACTTCTTAGCAGAAGGTGGATATGGTGCTGTCTACAGAGGGGTCTTGCCTGACGGGCAGGTTGTTGCAGTGAAGCAACACAAGATGTTGAGTGCACAAGGAGCGTCAGAGTTTTGCTCCGAAGTTGAAGTACTGAGGTGTGCACAGCATAGGAATTTGGTGATGCTGGTGGGATATTGTGTGGAGGTCAAGTGGATCCTTGTATACGAGTTTGCTTGCAATGGCTCTTTGGACAAGCATTTGTATGGAAGAGAAACAAATGAAGTAATGAGTTGGGACAGTAGGATGAAGGTTGCATTAGGAGCTGCAAGAGATGGCAAGCAGACGGCCAAACAGCTGAGGAAACACGGGTTATCGGTGCATTCGGCTACTTGGCGCCCGAGTACACGCAGACTGGACTAA 1401 0.4711 MMQQLCLAHNVKQVQTAAEVLADAEMGAVATKAGELGATWIILDRRLKKESDCCLKQLDCNVVLIDHAIPRILRAVDPPKLRKLATRELQTDPTVADMLGIIPTYNLAYNPDCNSLTTRSSLGLDSPCNGTDASSFMSNDKDKFSKASPSVADLKPVGSTFHLNSQYFHQVVEVEEERFDFTPSYSKSQPLAMVPRLDTVQSPQKSPACTMKEKTKACNALPKIQNDENRGTRRSIDSPRMWRNLGSPKQSTQLTTRRDSMATNRIEPITSPLSSTIDRTSSIRKTMSLSIKHPPTPPPLCSVCKHNAPIFGKAPRKFDYKEIIKATDGFSRQNFLAEGGYGAVYRGVLPDGQVVAVKQHKMLSAQGASEFCSEVEVLRCAQHRNLVMLVGYCVEVKWILVYEFACNGSLDKHLYGRETNEVMSWDSRMKVALGAARDGKQTAKQLRKHGLSVHSATWRPSTRRLD* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0959 466 MobiDBLite consensus disorder prediction 244 259 - -
Vvi4g0959 466 Gene3D Transferase(Phosphotransferase) domain 1 314 438 - -
Vvi4g0959 466 ProSiteProfiles Protein kinase domain profile. 330 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0959 466 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 302 404 - -
Vvi4g0959 466 SUPERFAMILY Protein kinase-like (PK-like) 316 437 IPR011009 -
Vvi4g0959 466 Pfam Protein tyrosine and serine/threonine kinase 333 435 IPR001245 GO:0004672|GO:0006468
Vvi4g0959 466 PANTHER OS01G0750732 PROTEIN 170 437 - -
Vvi4g0959 466 MobiDBLite consensus disorder prediction 226 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0959 Vvi-Chr4 15699468 15703202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0959 311 437 Trihelix Transcription Factor Family AT1G68690 47.656 1.26e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi4g0959 PK_Tyr_Ser-Thr 4.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0959 - - vvi:100256234 884.019