Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0955 ATGCTAATTGAATCTATGCCTAGTACTTCTTCCCTCCTTTTTAATGCCTGTCCACCTTCAATTCTAACAGTTCTATGCTTGTGTCTATGTCTATTTTTAGAAAAACATGAGGTTCTAACTTGGGAAAGAAGAGTTAAGATCCTAAGAGACTGCGCTCTGGCACTGAGATATCTCCATAACTATATAGATGGTTGCATTGTTCATCGAGATATCAAGCTTACTAATATCCTTCTGACCGATAACCTGGAACCAAAGCTCTCGGATTTTGGTTTGGCTAAGATGCTAGGGATGGAAGAAAGTAAAGTGTTCACTGATGTCCGGGGGACCATAGGCTATATGGACCCCGAGTACATGACCAACGCTAAGCTGACAGCTGCCAGTGACATCTACAGTTTTGGAATTGTTACTCTGCAACTTCTTTCAGGACAAAAGGTCATCGATTTGGATCTTGATGCCAGAGACCAACTAACGAGAAAGGCAAAGGATGTGAATATGGGGAAGCGTCCACTGAAGGATTTTGAGGACCCGAGACTGAAGGGAGAAGTAGTCACTGAGGATTTCCAGTCAATATTACAAGTTGCAGTACTTTGTGCTGCTAAATCAAATAAAGGGCGTCCGAGCATCGATCAAGTATTTCAAGAGATGGATAGGGCTTGGAAAAACACAGTTGCTTACATGAGGACAAAGGAAACGATCACACAGGCCACAACATCATACTCCAGATCCATGGAGGAATTTGTTTCAGTCTAA 750 0.424 MLIESMPSTSSLLFNACPPSILTVLCLCLCLFLEKHEVLTWERRVKILRDCALALRYLHNYIDGCIVHRDIKLTNILLTDNLEPKLSDFGLAKMLGMEESKVFTDVRGTIGYMDPEYMTNAKLTAASDIYSFGIVTLQLLSGQKVIDLDLDARDQLTRKAKDVNMGKRPLKDFEDPRLKGEVVTEDFQSILQVAVLCAAKSNKGRPSIDQVFQEMDRAWKNTVAYMRTKETITQATTSYSRSMEEFVSV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0955 249 Pfam Protein kinase domain 32 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0955 249 SUPERFAMILY Protein kinase-like (PK-like) 29 213 IPR011009 -
Vvi4g0955 249 Gene3D Transferase(Phosphotransferase) domain 1 28 242 - -
Vvi4g0955 249 SMART serkin_6 8 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0955 249 ProSiteProfiles Protein kinase domain profile. 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0955 249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 66 78 IPR008271 GO:0004672|GO:0006468
Vvi4g0955 249 PANTHER OS01G0253100 PROTEIN 32 219 - -
Vvi4g0955 249 FunFam probable receptor-like protein kinase At5g59700 27 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0955 Vvi-Chr4 15655478 15656628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0955 38 218 Receptor kinase-like Gene Family AT2G19230 37.912 7.83e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vvi4g0955 Pkinase 8.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0955 - - vvi:100242473 427.557