Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0952 ATGCAGAAATTGGTGGACTACATAGGTTTGCCTTGCCGGATAGCTCGAGGTTGCAAGTATTGTGTTGCCAACGCTTTGCTGCATTTTTCTAGGGTTTCTCTTTCACATGGCTTCGATGCCCATTCCTACGGAAGAGTTTTTTCTTGCAAAATGGTCACTTCCCTTAAGTTGGGCACCCTTGGACGAACTGTGGTGTGCACTATCCACCAGCCAAGCATTGATATATTTGATGCTTTTGATGAGCTATTTCTTTTGAAACAAGGAGGAGAGGAAATATATGCAGGCCCATTAGAACACCATTCTGCACATCTAATTAAGTACTTTGAGGGAATTGATGGAGTCAGTAAGATAAAAGATGGTTACAATCCGGCAACTTGGATGTTGGAAGTGACTTCAGCAGCACAAGAAGCAGCTCTAGGCATTAACTTCACCGATGTTTACAAGAACTCTGAACTATATAGGTAG 465 0.4258 MQKLVDYIGLPCRIARGCKYCVANALLHFSRVSLSHGFDAHSYGRVFSCKMVTSLKLGTLGRTVVCTIHQPSIDIFDAFDELFLLKQGGEEIYAGPLEHHSAHLIKYFEGIDGVSKIKDGYNPATWMLEVTSAAQEAALGINFTDVYKNSELYR* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0952 154 Pfam ABC-2 type transporter 69 130 IPR043926 GO:0140359
Vvi4g0952 154 PANTHER ATP-BINDING CASSETTE TRANSPORTER 56 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0952 Vvi-Chr4 15585636 15587835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0952 2 21 MAP Kinase Kinase Kinase AT4G24480 85.000 4.28e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0952 K08711 - vvi:100250693 191.43