Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0940 ATGGCCAAGTTTGGGGTCTTGGAAACTGATCCATCCATGGCAGCCAAGGCCACAGAGGAGCTGAAGAAGGAGTTGCAGAGGCTGGTGAGCAGAATTGTTGATGAAGATGAGAGCTGTGCTGACACCACTGATAAGGCTCTCAAAATTTTGTTTGCTTTGAGAGATTTCAAGTTCAAGGGGTCCCTTGATTTTGGGGTTGAAACGGAGAATCCGGCTCTGCCTCAGGAGTTCAGGTGCCCTATTTCCAAACAGCTCATGAGAGACCCTGTTGTGGTGGCCACTGGCCAGACATATGACAGGCCCTTCATTCAAAAATGGCTGAAAGACGGGCATAGGACTTGCCCCCGGACCCAACAAGTCCTCTCCCATACCATCCTCACCCCAAATAATTTGGTTCGAGAAATGATTTCAGAATGGTGCAAAGAACATGGGATTGAGCTTCCGAAGCCAGTTGAGGATGTCGATGAGGAAGTGATCACAGATGCAGACAGGGGGCACTTGAATTCGTTGCTTGAGAGGATGTCCTCTTCTGCTTCTGATCAGAAAGAGGCTGCAAGAGAGCTTAGGCTGCTCACAAAGAGGATGCCGTCATTTAGGGCCCTTTTCGGTGAATGCACTGATGCAGTTCCTCAGCTGCTCAGCCCGCTCTCACCAGATGCAGTGGATGTTGATCCTGAACTCCAAGAGGATTTGATCACCACAGTTTTAAATCTCTCGATACATGACAACAACAAGAAGCTAGTTGCAGAGGATCCAATGGCAATCCCCGTGCTCATTGAGTCCTTGAAGAGTGGAACCATTGAGACTAGGACCAACGCTGCTGCAGCCCTTTTCACATTATCAGCCCTTGATTCGAACAAGCTCATTATTGGGAAGTCAGGTGCTCTGAAACCTCTATTAGACTTATTGGAAGAAGGGCATCCATTAGCCATGAAAGATGTTGCCTCGGCCATATTTAATCTATGCATTGTCCTTGAGAACAAAGGGAGGGCTGTCCATGATGGGGCAGTCACAGTGATTCTGAAGAAGATCATGGATGGTATACTTGTTGACGAGCTATTGGCTATTCTCGCAATGTTGTCCAGTCATCAAAGGGCTGTTGAGGAGATGGGGGAGCTCGGAGCAGTTCCTTGCTTGCTTAGAATCATAAGGGAGAGCAAATGTGAGCGCAACAAGGAGAATTGTATTGCCATCCTGCACACGGTTTGTTTCAATGATCGAGCTAAATTGAGGGCAATCAGAGAAGAGGAAAATGACTATGGTACAATCTCGAGGCTGGCGCAGACTGGCACTTCGAGGGCTAAGAGGAAGGCCAACGGCATCCTTGAGAGGCTGAATAGAGTTGCTTTAATCACGCACACTGCATGA 1368 0.4825 MAKFGVLETDPSMAAKATEELKKELQRLVSRIVDEDESCADTTDKALKILFALRDFKFKGSLDFGVETENPALPQEFRCPISKQLMRDPVVVATGQTYDRPFIQKWLKDGHRTCPRTQQVLSHTILTPNNLVREMISEWCKEHGIELPKPVEDVDEEVITDADRGHLNSLLERMSSSASDQKEAARELRLLTKRMPSFRALFGECTDAVPQLLSPLSPDAVDVDPELQEDLITTVLNLSIHDNNKKLVAEDPMAIPVLIESLKSGTIETRTNAAAALFTLSALDSNKLIIGKSGALKPLLDLLEEGHPLAMKDVASAIFNLCIVLENKGRAVHDGAVTVILKKIMDGILVDELLAILAMLSSHQRAVEEMGELGAVPCLLRIIRESKCERNKENCIAILHTVCFNDRAKLRAIREEENDYGTISRLAQTGTSRAKRKANGILERLNRVALITHTA* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0940 455 CDD RING-Ubox_PUB 74 126 IPR045210 -
Vvi4g0940 455 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Vvi4g0940 455 PANTHER U BOX DOMAIN-CONTAINING 22 445 - -
Vvi4g0940 455 Gene3D - 152 449 IPR011989 -
Vvi4g0940 455 SMART arm_5 362 404 IPR000225 GO:0005515
Vvi4g0940 455 SMART arm_5 241 282 IPR000225 GO:0005515
Vvi4g0940 455 SMART arm_5 283 323 IPR000225 GO:0005515
Vvi4g0940 455 SUPERFAMILY ARM repeat 167 445 IPR016024 -
Vvi4g0940 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 146 IPR013083 -
Vvi4g0940 455 FunFam RING-type E3 ubiquitin transferase 157 450 - -
Vvi4g0940 455 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Vvi4g0940 455 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Vvi4g0940 455 Coils Coil 15 38 - -
Vvi4g0940 455 FunFam RING-type E3 ubiquitin transferase 72 146 - -
Vvi4g0940 455 SUPERFAMILY RING/U-box 66 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0940 Vvi-Chr4 15210734 15212657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0940 135 455 U-box Gene Family AT3G07360 60.736 1.21e-133 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0940 - - vvi:100267223 889.026