Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0938 ATGAGAGGAAAAGGTTCCTCTAGCTCAAAAATTTCTACTCTCATTGTTGATGATGACCCTCTAACTCGAAGAATCCACAAAGTGCTTCTAACTAAAGTTGGACTAGAAACTCAGGCTGTCGAAAATGGTAAAGAGGCTGTTGATCTTTACCGCTCAGGGGCGTCTTTTGATCTTATTCTCATGGATTTAGAAATGCCAATCATGGATGGACCTAAGGCAACAAAAGAGCTACGAGCTATGGGAGTCCAAAGCATGATCGTAGGAGTTACAGCGCGAGATCTTGAGGTAGAGAAGCAGATGTTCATGGCATCAGGCCTTGATGATTGCTATGTGAAGCCATTGACAACAGATACGGTTACCGCTCTTGTGGAAAAGCTCAATAAAGACAATTGA 393 0.4275 MRGKGSSSSKISTLIVDDDPLTRRIHKVLLTKVGLETQAVENGKEAVDLYRSGASFDLILMDLEMPIMDGPKATKELRAMGVQSMIVGVTARDLEVEKQMFMASGLDDCYVKPLTTDTVTALVEKLNKDN* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0938 130 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Vvi4g0938 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 128 - -
Vvi4g0938 130 Pfam Response regulator receiver domain 14 123 IPR001789 GO:0000160
Vvi4g0938 130 SUPERFAMILY CheY-like 10 126 IPR011006 -
Vvi4g0938 130 CDD REC_hyHK_CKI1_RcsC-like 14 123 - -
Vvi4g0938 130 SMART REC_2 11 123 IPR001789 GO:0000160
Vvi4g0938 130 Gene3D - 2 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0938 Vvi-Chr4 15151574 15152755 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0938 11 126 Response Regulator Gene Family AT3G04280 53.390 1.45e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi4g0938 Response_reg 2.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0938 - - vvi:100241650 253.062