Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0935 ATGGGATTTGGAAAGTATTCATCTAGCTCAAAGATTTCTGCACTTGTTGCAGATGATGACACTATAATTCAAAAAATCCACAAAGCACTTCTAACTAAACTTGGGCTGGAAGTGAATGTTGTGGCAAATGGTAAGGAGGTTCTTGATCTTTATAGATCAGGAACGTCTTTTGACCTTATCTTTATGGATATGGAAATGCCAATCATGGATGGACCTGAGGTAACAAAAGAGCTGCGAGCAATGGGTGTACAAAGCATTATCATGGGTGTCACTTCACGTGATCTTGACTCAGAGAAGGAAGCATTCATGGCATCAGGTTTGAATGATTGTTACATGAAGCCCTTGACTATAAGCAAGATTAGCTCTCTATTGCAAGATCTCAAGAAAAAGAATTAG 396 0.3889 MGFGKYSSSSKISALVADDDTIIQKIHKALLTKLGLEVNVVANGKEVLDLYRSGTSFDLIFMDMEMPIMDGPEVTKELRAMGVQSIIMGVTSRDLDSEKEAFMASGLNDCYMKPLTISKISSLLQDLKKKN* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0935 131 CDD REC_hyHK_CKI1_RcsC-like 15 124 - -
Vvi4g0935 131 SUPERFAMILY CheY-like 11 127 IPR011006 -
Vvi4g0935 131 Pfam Response regulator receiver domain 15 123 IPR001789 GO:0000160
Vvi4g0935 131 Gene3D - 4 131 - -
Vvi4g0935 131 SMART REC_2 12 124 IPR001789 GO:0000160
Vvi4g0935 131 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Vvi4g0935 131 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0935 Vvi-Chr4 15089604 15090672 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0935 12 127 Response Regulator Gene Family AT3G04280 45.763 1.31e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi4g0935 Response_reg 6.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0935 - - vvi:100251902 254.218