Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0933 ATGGCGAGTACAGAAGAAGCCAAGCTCCAACACTTCCTTCAATGGCTACAGTTGAATAGAGTTGAATTGCGTGGTTGCGAGATCAAGTACTGTGATTCCAACAAAGGGTTTGGTATATTTTACGCGAATGACGCTTCAGATGGGATTCCACTTGTGGTTCCGCTAGATTTAGCCATAACTCCAATGAGGGTGCTGCAAGACCCATTTTTGGGACCAGAGTGTAGAGCAATGTTTGAAGAAGGAGAAGTGGATGACAGGTTATTGATGATATTGTTTCTAACTGTGGAGCGCCTCCGTAAGAATTCTTCTTGGAAACCGTATCTCGATATGCTTCCAACCACTTTTGGGACTCCACTTTGGTTTATTGATGATGAGTTCATCGAGCTGAAGGGTACATCGGTACATCGGGCAACTGAATTGCAGAAGAAGCAGTTGCAGTCTCTATATGATGATAAAGTGAAGGATTTGGTGAAAAAACTTCTAATTCTTGACGGGGATTCAAAAGGCGAGGTGCATTTTGAAGATTTTCTCTGGGCAAATTCCATATTCTGGACACGTGCTTTGAACATTCCTCTTCCACGCTCGTATGTATTTCCCCAAATCCAAGAAGAGCAAAATAGTTGCATTCCAAACATTATTAAAGATTCTGGAGCTTTCACTGATCAAATTTCTAGTGGAAACTTGGTTAGTGGGATGGATGAGAAAAGCACTGATGTTCATGGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGATTTGAAGGCAGCAGCAACTTGGGAAGTTGACAACACAGGATTGAAAACTGGAGTTCCTTTATCTATGTACCTTCTCTCTGTTGAACAAAGTCCGTGCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAGGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGGTCCATTATCCAATGGAGTTATTTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAGAAGGCTGAAATGAGGTGTCTTTTACATAAAACTCTGCTAGATCGTGGGTTTTTTCCAGCGAGCACCCTAAAAAATGAACAGAATGGTAAGTCCACAGATCATCAGGTCTGCAACTATAGTTGGAGTGGTCAACGCAAGACACCTTCTTACTTAAATAAGCTGGTCTTTCCTGAGGCCTTCTTAACTGCCTTGAGGACAATATCCATGGAGGAAGATGAGCTTTCTAGGGTCTCATCACTGCTGGAAGAGCTTGCTGAATCTGGAGGAAGGCAACCATTGGATTCAGAAACTCGAGCAGCAGTATGGGAGGCTTGTGGAGATTCAGGGGCTTTACAAGTGCTTGTTGATCTTCTTAATGTGAAGATGATGGATCTTGAAGAGGGTTCTGGAACTGAGGACAATGATACTGAACTACTTGAGAAGGCCCTCATGACTGAAATTCCAGAACAGCACACAAGTGGGACAGATAGCTGCATTCCACACAAGATGAGCAGAAACAGATGGTCAAGTATAGTATACAGACGAGGGCAAAAGCAACTGACCCGTCTTTTCCTCAAGGAAGCTGAGCATGCCTTGCAATTATCGTTGAGCGAAGGCAACTGA 1698 0.4287 MASTEEAKLQHFLQWLQLNRVELRGCEIKYCDSNKGFGIFYANDASDGIPLVVPLDLAITPMRVLQDPFLGPECRAMFEEGEVDDRLLMILFLTVERLRKNSSWKPYLDMLPTTFGTPLWFIDDEFIELKGTSVHRATELQKKQLQSLYDDKVKDLVKKLLILDGDSKGEVHFEDFLWANSIFWTRALNIPLPRSYVFPQIQEEQNSCIPNIIKDSGAFTDQISSGNLVSGMDEKSTDVHGFESQVNRGTSSSMQEEILWVEGLVPGIDFCNHDLKAAATWEVDNTGLKTGVPLSMYLLSVEQSPCHMQKEISISYGNKGNEELLYLYGFVIDNNPDDYLMVHYPMELFKNVPFSESKGQLLEAQKAEMRCLLHKTLLDRGFFPASTLKNEQNGKSTDHQVCNYSWSGQRKTPSYLNKLVFPEAFLTALRTISMEEDELSRVSSLLEELAESGGRQPLDSETRAAVWEACGDSGALQVLVDLLNVKMMDLEEGSGTEDNDTELLEKALMTEIPEQHTSGTDSCIPHKMSRNRWSSIVYRRGQKQLTRLFLKEAEHALQLSLSEGN* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0933 565 Gene3D set domain protein methyltransferase, domain 1 5 331 - -
Vvi4g0933 565 CDD SET_LSMT 32 331 - -
Vvi4g0933 565 Pfam SET domain 89 317 IPR001214 GO:0005515
Vvi4g0933 565 SUPERFAMILY SET domain 8 335 IPR046341 -
Vvi4g0933 565 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0933 Vvi-Chr4 15011823 15039688 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi4g0933 SET 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0933 - - vvi:100267311 1108.98