Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0924 ATGGGATCAAGTAGTACCTATGCTGCACTTGTGTATTTTTCTGCTTACAATGCCAAGGAGTATGGAAAGACGGTCACGGTTAACCAATTTCAGGTTAAGGATGTTAGCTGGGATCCAGAGCTTGGTGGCCAAAATATGGAAATGCGTTTAGTGGAGTATTTTGCAGATGAGTTCAACCAACAAGTTGGAAATGGAGTTGATGTGAGGAAGTTCCCCAAGGCAATGGCTAAATTGAAGAAACAGGTTAAGCGGACAAAAGAAATTCTAAACTTCAGGAGTGCCATAACTTGTGAGAAGTTTGAGGAGCTCTGCGAAGATTTGTGGGAGAGATCTCTTATTCTTGTGAAGGAAGTGCTTAAGAATTCAGGTTTGAAGGTTGATGAGATATATGCAGTGGAGCTGATAGGAGGTGCCACTCGAGTGCCAAAGTTGCAGGCAAAGCTTCAGGAATTTCTTGGAAGGAAGGATCTGGACAGACATCTGGATGCTGATGAAGCTATAGTTCTTGGTGCTGCACTACATGCTGCAAATTTAAGTGATGGAATCAAATTGAATCGCAAGCTAGGAATGGTTGATGGTTCTTCATATGGACTCGTGGTTGAGTTAGATGGCCCTGGTCTTTTGAAAGATGAAAGCACTAGACAGTTAATTGTCCCAAGAATGAAAAAACTCCCCAGTAAGATGTTCAGATCCATTATCCATGACAAAGATTTTGATGTTTCACTTTCATATGAGGATGAAGATCTTCTACCGCCTGGTGTTTCCTCTCCTAGATTTGCTCAGTATGCCGTGTCTGGTTTGGCAGATGCTAGTGCAAAATACTCTTCTCGGAACCTGTCTTCTCCCATCAAGGCAAATCTGCATTTCTCTCTTAGTAGAAGTGGGATACTTTCTCTGGATCGAGCAGATGCTGTTACTGAAATAACAGAATGGATTGAAGTTCCCAAAGTGAATGTGACTCTGGAGAATTCATCTGCTGCATCCCCCAATATATCAGTTGAAACAAGTCCTCATAATGCTTCAGAAGACAGCAATGAAAACTTGCATACTGATGGCAGGATTGATAACACATCCAATGCCACTGAAAATCAAAGTGACAAGGATCTTGGCACAGAAAAAAAAACTGAAAAAGTAGTTGAGAAGACAGTGGCACCTGGAATGCCACTTTCAAAAGAATTAATTGCTGAAGCTAAACACAAGTTGGAAGCATTGGACAAAAAGGATGTAGAGCGGCGTAGATCTGCAGAGTTAAAAAATAATCTGGAAGGATACATCTATACTACTAAAGAAAAGCTTGAATCATCTGAGGAGTTAGAGAAGATATCAACCACTCAGGAACGCCAGTCCTTTATTGAAAAGCTTGATGAGGTGCAAGAATGGTTGTATACTGATGGTGAAGATGCTACAGCTGCTGAGTTTCAAGAACGTCTAGATTTGTTAAAATCTATTGGTGACCCAATATTTTTCAGATTGAATGAGCTTACTGCATGGCCAGCGGCAATGGAAGATGCTCGCAAATACCTTGGTCAGCTGAAACAGATTGTACAGGACTGGGAGACAAAGAAACCTTGGCTTCTGAAAGATAAAATAGATGAGGTCCTGAGTGATGGTGACAAGGTCAAAAATTGGTTGGAAGAGAAAGAGGCCGAGCAGAAAAAGACTTCTGGATTCAGCACTCCTGCATTTACCTCAGATGAGGTGTATGAGAAAATTTTCAAATTTCAAGAGAAGGTTGCCAGCATCAACCGAATTCCTAAGCCAAAGCCAAAAATTGAGAAGCCCACAAAGAATGAAACCACAAACAATGGGGCTAGCAGTGAGAGAAAGCAAATGCTTCCAACTCATCATCTGAGGAGACTCCCTCCTCCCAAGATGATCAATCAGCCGCAGGGGATTCAGATGGCAAGCCCAACGAGGAAGCAGAAGCAGATGTCCATGATGAGTTATGATCAAACCAAAACAGACATACAGGTATCTATACTGATTATTGCCCTCCTAATTCAAAAAACATGGAGAAGCAAATGTAGAATGAAAGGGGTGAGGCAGATGCAGAAAGAAAACAGAGATGAACCCTTTTTTTCTTTTATCTTTTCTAGGAAGGCATTTTTTTTTCTTATCCCACATCCTCTCAGAACAAAGAAGAGAAACAGGAATATGGTTCCCATGTTATACCCAGCTGATGGGGAATTTTGGTTTGTTATATTGAATATTCTGACCATATAA 2223 0.4116 MGSSSTYAALVYFSAYNAKEYGKTVTVNQFQVKDVSWDPELGGQNMEMRLVEYFADEFNQQVGNGVDVRKFPKAMAKLKKQVKRTKEILNFRSAITCEKFEELCEDLWERSLILVKEVLKNSGLKVDEIYAVELIGGATRVPKLQAKLQEFLGRKDLDRHLDADEAIVLGAALHAANLSDGIKLNRKLGMVDGSSYGLVVELDGPGLLKDESTRQLIVPRMKKLPSKMFRSIIHDKDFDVSLSYEDEDLLPPGVSSPRFAQYAVSGLADASAKYSSRNLSSPIKANLHFSLSRSGILSLDRADAVTEITEWIEVPKVNVTLENSSAASPNISVETSPHNASEDSNENLHTDGRIDNTSNATENQSDKDLGTEKKTEKVVEKTVAPGMPLSKELIAEAKHKLEALDKKDVERRRSAELKNNLEGYIYTTKEKLESSEELEKISTTQERQSFIEKLDEVQEWLYTDGEDATAAEFQERLDLLKSIGDPIFFRLNELTAWPAAMEDARKYLGQLKQIVQDWETKKPWLLKDKIDEVLSDGDKVKNWLEEKEAEQKKTSGFSTPAFTSDEVYEKIFKFQEKVASINRIPKPKPKIEKPTKNETTNNGASSERKQMLPTHHLRRLPPPKMINQPQGIQMASPTRKQKQMSMMSYDQTKTDIQVSILIIALLIQKTWRSKCRMKGVRQMQKENRDEPFFSFIFSRKAFFFLIPHPLRTKKRNRNMVPMLYPADGEFWFVILNILTI* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0924 740 MobiDBLite consensus disorder prediction 351 365 - -
Vvi4g0924 740 Gene3D Actin; Chain A, domain 4 42 110 - -
Vvi4g0924 740 MobiDBLite consensus disorder prediction 586 609 - -
Vvi4g0924 740 MobiDBLite consensus disorder prediction 324 343 - -
Vvi4g0924 740 MobiDBLite consensus disorder prediction 324 382 - -
Vvi4g0924 740 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 186 335 IPR029047 -
Vvi4g0924 740 Gene3D - 2 158 - -
Vvi4g0924 740 PANTHER HSC70CB, ISOFORM G-RELATED 1 607 - -
Vvi4g0924 740 SUPERFAMILY Actin-like ATPase domain 28 178 IPR043129 -
Vvi4g0924 740 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 416 499 IPR029048 -
Vvi4g0924 740 ProSitePatterns Heat shock hsp70 proteins family signature 3. 132 146 IPR018181 -
Vvi4g0924 740 Pfam Hsp70 protein 29 488 IPR013126 GO:0005524|GO:0140662
Vvi4g0924 740 Gene3D - 389 499 IPR029048 -
Vvi4g0924 740 MobiDBLite consensus disorder prediction 366 380 - -
Vvi4g0924 740 FunFam Heat shock 70 kDa protein 17 186 333 - -
Vvi4g0924 740 FunFam Heat shock 70 kDa protein 4 389 501 - -
Vvi4g0924 740 Gene3D - 159 176 - -
Vvi4g0924 740 PRINTS 70kDa heat shock protein signature 161 181 - -
Vvi4g0924 740 PRINTS 70kDa heat shock protein signature 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0924 Vvi-Chr4 14692285 14705054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0924 24 501 Calmodulin-binding Proteins AT1G16030 25.657 3.76e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0924 K09486 - vvi:100259994 1095.11