Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0922 ATGGGATTTGGAAAGGCTACATCGAGCTCAAAGGCCATGAAAATCATTGACACTGAAAAGAAGATCTCTGTTCTCATTGTAGAGGATGATCCTCTTATTCAAAAAATCCATAAAGTGATGATGGCTAAATTTGGAACTGAAGTCCAGGTTGTGGCAAATGGTAAAGAAGTCGTTGACCTATACCGCTCAGGCGCATCTTTTGATCTCATCCTTATGGATTTCGAAATGCCTATTATGGATGGATTTGAAGCAACCAAGGAGCTCCGCTCAATGGGTGTTACGAGCATGATTGTAGGAGTGACATCTCGTAGCCAAGACTCAGAGATACAAGCTTTCATGAAGTCTGGTCTAAATGCTTGCTATGTGAAGCCCCTCAATGCCGAAAAGGTCACTGCTGTGCTCAATGAGCTTAAGAACAACTGA 423 0.4255 MGFGKATSSSKAMKIIDTEKKISVLIVEDDPLIQKIHKVMMAKFGTEVQVVANGKEVVDLYRSGASFDLILMDFEMPIMDGFEATKELRSMGVTSMIVGVTSRSQDSEIQAFMKSGLNACYVKPLNAEKVTAVLNELKNN* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0922 140 SMART REC_2 22 134 IPR001789 GO:0000160
Vvi4g0922 140 Gene3D - 7 140 - -
Vvi4g0922 140 SUPERFAMILY CheY-like 20 138 IPR011006 -
Vvi4g0922 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 139 - -
Vvi4g0922 140 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Vvi4g0922 140 CDD REC_hyHK_CKI1_RcsC-like 24 134 - -
Vvi4g0922 140 Pfam Response regulator receiver domain 24 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0922 Vvi-Chr4 14598640 14599614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0922 5 137 Response Regulator Gene Family AT3G04280 50.000 6.06e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi4g0922 Response_reg 2.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0922 - - vvi:100255209 270.396