Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0916 ATGGGGAGATCAAGAAAAGGGTGCATGAAGGGCAAGGGAGGGCCTGAGAATGCTCTATGCTCATACAGAGGTGTGAGGCAAAGGACATGGGGGAAATGGGTGGCTGAGATCCGAGAGCCCAACCGCGGAGCCAGGCTCTGGCTAGGCACCTTCAACACTTCTTATGAGGCTGCCATGGCCTACGACATGGCCGCGCAAAAGCTCTATGGTCCCTCAGCCAAGCTCAACTTGCCACATGACTCGTCACCACTTTCCACCACCCCCACTGCCACAACCTCTGCAGTGCCTTCTAACTTTGATGGTGTTGGAGGGCGGACTGAAACGAGTAATTCGGTGAAGACTACTACCTCCAATTGGGTGTGTGGAGTACAAGAGGTGAAGTATGATCATGAGGAAAATTTTTGGGAGAGCTCAAGCATGTTTGATGAGATCCAAACTGAAAATTGGGTTGAGTTTCCAATAGAGGGTGACCCTTTTGGGATCGACAATCTTGGAACTGGGGTGGACGGAGAAGAAGTCATGGATTGGGATGGAGTACAAGTTACATGGAGTTTGTAA 558 0.5072 MGRSRKGCMKGKGGPENALCSYRGVRQRTWGKWVAEIREPNRGARLWLGTFNTSYEAAMAYDMAAQKLYGPSAKLNLPHDSSPLSTTPTATTSAVPSNFDGVGGRTETSNSVKTTTSNWVCGVQEVKYDHEENFWESSSMFDEIQTENWVEFPIEGDPFGIDNLGTGVDGEEVMDWDGVQVTWSL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0916 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 105 - -
Vvi4g0916 185 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vvi4g0916 185 MobiDBLite consensus disorder prediction 79 111 - -
Vvi4g0916 185 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Vvi4g0916 185 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Vvi4g0916 185 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Vvi4g0916 185 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Vvi4g0916 185 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vvi4g0916 185 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vvi4g0916 185 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vvi4g0916 185 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0916 Vvi-Chr4 14398787 14399344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0916 1 79 AP2-EREBP Transcription Factor Family AT5G18450 87.342 4.79e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi4g0916 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0916 - - vvi:100248518 380.563