Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0909 ATGGCCAGACCTCAGCAGCGATATCGAGGCGTCCAACATAGGCATTGGGGTAGTTGGGTCTCTGAAATTCGCCACCCACTTCTGAAGACTGGAATTTGGTTGGGCACATTCGAAACAGCGGAGGACGCTGCTTGA 135 0.5333 MARPQQRYRGVQHRHWGSWVSEIRHPLLKTGIWLGTFETAEDAA* 45
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0909 44 Pfam AP2 domain 7 44 IPR001471 GO:0003700|GO:0006355
Vvi4g0909 44 Gene3D AP2/ERF domain 6 44 IPR036955 GO:0003700|GO:0006355
Vvi4g0909 44 CDD AP2 6 44 IPR001471 GO:0003700|GO:0006355
Vvi4g0909 44 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vvi4g0909 44 PRINTS Ethylene responsive element binding protein signature 30 44 IPR001471 GO:0003700|GO:0006355
Vvi4g0909 44 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 44 - -
Vvi4g0909 44 ProSiteProfiles AP2/ERF domain profile. 7 44 IPR001471 GO:0003700|GO:0006355
Vvi4g0909 44 SMART rav1_2 7 44 IPR001471 GO:0003700|GO:0006355
Vvi4g0909 44 SUPERFAMILY DNA-binding domain 7 44 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0909 Vvi-Chr4 14185597 14185830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0909 1 44 AP2-EREBP Transcription Factor Family AT5G25190 90.909 2.77e-25 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi4g0909 AP2 5.2e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0909 - - sita:101753156 91.6633