Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0903 ATGGCAGCCATTGCCGTGATTGACGATGAGAAGAAGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCATGCTACCTATGTCCCCCACACAGCTGGCAGGTACTCTGTCAAGCGGTTCAGAAAAGCCCAATGCCCAATTGTGGAGAGGCTCACAAATTCTCTGATGATGCACGGGCGGAACAATGGAAAGAAGCTGATGGCTGTTAGGATTATGAAACATGCCATGGAAATTATTCACTTGTTGACTGATCAGAATCCCATCCAAGTTATTGTTGATGCTGTCATCAACAGTGGACCAAGAGAAGATGCAACACGTATTGGCTCTGCTGGTGTTGTTAGACGACAAGCTGTTGATATCTCTCCTTTGAGGCGTGTCAATCAAGCTATTTATCTGCTCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCGTTGA 615 0.4764 MAAIAVIDDEKKPTEVKLFNRWSFDEVQIGDMSLLDYVAVNPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIMKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0903 204 FunFam 40S ribosomal protein S5 2 204 - -
Vvi4g0903 204 Pfam Ribosomal protein S7p/S5e 58 204 IPR023798 -
Vvi4g0903 204 PANTHER RIBOSOMAL PROTEIN S7 10 204 IPR000235 GO:0006412
Vvi4g0903 204 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 204 IPR000235 GO:0006412
Vvi4g0903 204 Gene3D Ribosomal protein S7 domain 1 204 IPR036823 -
Vvi4g0903 204 SUPERFAMILY Ribosomal protein S7 17 204 IPR036823 -
Vvi4g0903 204 CDD uS7_Eukaryote 17 204 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vvi4g0903 204 NCBIfam 30S ribosomal protein S7 15 204 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vvi4g0903 204 ProSitePatterns Ribosomal protein S7 signature. 70 96 IPR020606 GO:0003723|GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0903 Vvi-Chr4 14057810 14059841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0903 1 204 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 85.990 2.24e-133 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0903 K02989 - vvi:100232926 399.823