Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0896 ATGCCCTTGGAAGGAGTTTTCATTGAACCCTCTTCAAACCCAGTCCCGGATCTTTCTCTTCACATAAGCCCTCCCAACAACACTTCTTCTCCCACATCAATTTGCAATATTAGCAGCAATGAAGGAGGTTCAAACACCAATCTTTTGGGCCAATGCCAAGCTCTTAAATCTGACTCTAACACCTCCGTAAGGAGCAACTTGCAAGCTTACACCGAGCTTTCTTTAGCACACGCAGCAAATGTGATGGATGAAGACGGCCGATGTTCGAGGAATTTCACAGTTGGAGCTGATCAAGAACAACTGCACAACCCATATCATCAAAATCGTCATCATCATCTCAGCCACCACCCTAATAACAATTTAAATCACATAAATCATGGGGTTTCACTGCTCGATGTATCCGATGTTCTGAGGCCAATAAAAGGGATTCCGGTCTATCACAATCGTTCCTTTCCCTTCTTGCCTTTGGACCATTCCAGAGAGAAGGATTCAAGGATGAACTTGTACCAATTGTCATATCCCTCTTGGTCTTCGTCCTTGGCACCATCTTCTTCTTGTTCCTCTTTGTGCTCTTCTTCTGTTTCACACCCTCCTTCACCTTATTTTGGAGGAGGTTTGGATCCCATGTCAATCTTGAATTCCGGACCTAATACATCTTCATCAGCCTATCGGATAGCGGCTGCAGCTAGGCTCAATGGGCTCTCGTCGGATGCGTTCAAATCCCATCAACTACACCATCACCATGTCCCTAGTCACCATGGAGTTGGGCCTTCTGAGGCTTCACATGGGATGATGAGATCAAGATTCATACCCAAGCTCCCTACTAAGAGAAGCATGAGGGCTCCCAGGATGCGCTGGACAAGCACTCTTCACGCTCGATTCGTTCACGCCGTGGAGCTTCTCGGCGGCCATGAAAGGGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATGTTAAGGATCTCACACTAGCTCATGTCAAAAGTCATTTACAGATGTATCGAACAGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGGCCAATCAGATGGGTCTGGTGAAGAAGACATCTCCCCAATGGGCAATGCCAGCGACTGTGGCTTATGCCGATTCACCGATCAAAGAGGAGCCTCGGAGGGGTCTCTGCAACAGGAAATTGACTACCCTTCTACAAATTTGTGGAGTAACTCTTCAAGCAGTAGAGAAGCTTGGTTGCAGCAAAACTCTAGTGAGATGGATGGGCTCAAAACAGCATCTTTTCCGTCACAACAAAGATCGGGACATCAAATAGAGGAATGCAATTCAACTCTACTGAAAGACTACCTAGGGCCTAATCTGGATTGTAAAAACCCGAGCTTGGAGTTCACGCTAGGCAGACCGGATTGGCATGGAAAAGAGCATGACTGA 1407 0.4684 MPLEGVFIEPSSNPVPDLSLHISPPNNTSSPTSICNISSNEGGSNTNLLGQCQALKSDSNTSVRSNLQAYTELSLAHAANVMDEDGRCSRNFTVGADQEQLHNPYHQNRHHHLSHHPNNNLNHINHGVSLLDVSDVLRPIKGIPVYHNRSFPFLPLDHSREKDSRMNLYQLSYPSWSSSLAPSSSCSSLCSSSVSHPPSPYFGGGLDPMSILNSGPNTSSSAYRIAAAARLNGLSSDAFKSHQLHHHHVPSHHGVGPSEASHGMMRSRFIPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEEDISPMGNASDCGLCRFTDQRGASEGSLQQEIDYPSTNLWSNSSSSREAWLQQNSSEMDGLKTASFPSQQRSGHQIEECNSTLLKDYLGPNLDCKNPSLEFTLGRPDWHGKEHD* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0896 468 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 467 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vvi4g0896 468 FunFam Myb family transcription factor 280 338 - -
Vvi4g0896 468 MobiDBLite consensus disorder prediction 404 431 - -
Vvi4g0896 468 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 335 IPR006447 GO:0003677
Vvi4g0896 468 SUPERFAMILY Homeodomain-like 279 335 IPR009057 -
Vvi4g0896 468 MobiDBLite consensus disorder prediction 337 359 - -
Vvi4g0896 468 Gene3D - 281 338 - -
Vvi4g0896 468 MobiDBLite consensus disorder prediction 337 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0896 Vvi-Chr4 13641255 13649842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0896 1 465 G2-like Transcription Factor Family AT5G16560 42.623 4.06e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi4g0896 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0896 - - vvi:100244905 820.461