Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0886 ATGCAGATCTTCATCAAAACTCTTACCGGAAAGACCATTACTTTGGAAGTCGCAAGCTCTGACGCCATTGACAACGTGAAAGCGGAGATCAGAATAAGAGAGTGA 105 0.4381 MQIFIKTLTGKTITLEVASSDAIDNVKAEIRIRE* 35
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0886 34 Pfam Ubiquitin family 3 31 IPR000626 GO:0005515
Vvi4g0886 34 PANTHER UBIQUITIN 1 31 - -
Vvi4g0886 34 SUPERFAMILY Ubiquitin-like 1 31 IPR029071 -
Vvi4g0886 34 FunFam Polyubiquitin-C 1 34 - -
Vvi4g0886 34 Gene3D - 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0886 Vvi-Chr4 13400788 13400892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0886 1 34 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 79.412 3.97e-13 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0886 - K02927 mus:103972754 56.9954