Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0885 ATGGACCTGTCATCAAAACCCATCTTTCTACCTTCCATTGCAGTACTGCTTTTCTTTGCCTGTTCTGGGTTCTTGGTTCCACATATTGAAGCTGCTTCAGGCTACAGCAACTTAGTATACAATAGTTGTGCAAACCAGACACTTACAGATCCCATTGAGTCTTACTCCCAAACTCTCTCATCACTTCTTGGAATTCTTACTGCAAAATCTCTGCATTCCAGCTTCTTTAAGGGCAGTGTAGGCGATGATCACGCGGCCTTTTTCGGTCTCTTCCAGTGCAGAGGCGATCTCAGTAATGCCAACTGCTACAACTGCGTGAGCAGGCTTCCTGCACTGTCAAAGAGACTATGTGGAGAAAGTTTGGGTGCTCGGGTTCAGCTTTCTGGGTGCTACATACAGTATGAGGCTGATGGAGTTGCTGAGAATTCTGAACCTGAGTTGCTGTACAAGTTGTGCAGTGAAACAGAAGCAAGAGGAAGTGGGTTTGAGGAGATGAGAACTGAGGCTTTTGCCGCAGTTGAAATGGGTGTGAAGAGCAGCGGCAATAATGGGTTCTATCAAGAGACCAGTGGAGAGGTGAATTTGATGGCGCAGTGCCAGAGGGATTTGGATATCTGTGAGTGCGGTGAGTGCATGACTAATGCAGTGCAGGTGGCTCAGGAAGAATGTAAATCTTCAGTTTCAGGGCAAATTTATATGGGCAAGTGCTCTTTGAGCTATACCTTCTATCCAAATGGGATACCGTCAACTAACTCACACCATGAGAAAGGGACGGAAACAAGTTCAGCAAAAATGGCAGCAATAGCGGTGGGAGCAGCAGCTGCCTTGTTTTTTGGATTATTTTTTTTAAAGCTCATTAAGTCGTGGGTCAAGAAAGGTGATGATGATTTCTGA 894 0.4564 MDLSSKPIFLPSIAVLLFFACSGFLVPHIEAASGYSNLVYNSCANQTLTDPIESYSQTLSSLLGILTAKSLHSSFFKGSVGDDHAAFFGLFQCRGDLSNANCYNCVSRLPALSKRLCGESLGARVQLSGCYIQYEADGVAENSEPELLYKLCSETEARGSGFEEMRTEAFAAVEMGVKSSGNNGFYQETSGEVNLMAQCQRDLDICECGECMTNAVQVAQEECKSSVSGQIYMGKCSLSYTFYPNGIPSTNSHHEKGTETSSAKMAAIAVGAAAALFFGLFFLKLIKSWVKKGDDDF* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0885 297 ProSiteProfiles Gnk2-homologous domain profile. 144 245 IPR002902 -
Vvi4g0885 297 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi4g0885 297 Pfam Salt stress response/antifungal 155 241 IPR002902 -
Vvi4g0885 297 Pfam Salt stress response/antifungal 43 135 IPR002902 -
Vvi4g0885 297 ProSiteProfiles Gnk2-homologous domain profile. 36 139 IPR002902 -
Vvi4g0885 297 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 15 289 - -
Vvi4g0885 297 Gene3D - 145 244 IPR038408 -
Vvi4g0885 297 Gene3D - 35 137 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0885 Vvi-Chr4 13339675 13341177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0885 12 244 Pollen Coat Proteome AT4G20670 21.053 5.93e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0885 - - vvi:100267320 572.778