Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0876 ATGAAGGAATCCTACCAGATTTTAGCCATTTTTGTGGCTGGGTTTTGCTCTCTTCTTCTCTGTGCAGAGTCTCAAGAGGATGCTTCGGTGATGTTGGCTCTGAAAGACAGCTTGAGCAACTCTGAGTCTCTCGGATGGTCCGGCCCAGATCCTTGCGAATGGAAACACGTTGTCTGCTCAGAAGACAAACGGGTGACCCGGATCCAAGTTGGGCGACAAGGCCTTCAAGGTACACTCCCTTCTAGTCTTGGTAATCTCACTGAGTTGGAGCGTTTAGAGCTCCAATGGAACAACATCTCGGGTCCTCTCCCGAGCTTAAAGGGTCTGAGTTCATTGCAAGTGTTGATGCTGAGCAACAACCAGTTTACTTACATTCCCGTTGATTTCTTTTCTGGGTTGTCATCTCTTCAATCAGTAGAAATTGATAACAATCCCTTTTCCGCCTGGGAAATACCCCAAAGCCTGAAGAATGCTTCCGCGCTTCAAAATTTCTCCGCCAATTCTGCCAATATTACTGGAAATATACCCGATTTTTTAGGTCCTGTTGCATTTCCCGGGCTGGTAAATTTGCATTTGGCTTTTAATGCTCTCGTTGGTGGCTTGCCCTCTGCCCTTTCTGGATCCCTAATTGAGTCTCTATGGGTTAATGGTCAGATGAGTGAGGAGAAACTTAGTGGGACCATTGATGTTATACAGAACATGACTTCTTTGAAGGAGGTTTGGCTGCATTCCAATGCCTTTTCTGGTCCATTGCCTGATTTTTCGGGTTTGAAAGACTTGCAGAGCTTGAGTTTGAGGGATAATCTTTTCACTGGTGTTGTCCCAGTGTCGTTAGTGAATCTCGGATCCTTAGAGGCTGTAAATTTAACAAACAATTTTCTGCAAGGACCAGTGCCTGAGTTCAAAAACTCGGTTGCAGTCGATATGACTCCAGATGGCAATAGCTTTTGTTTGCCAAAGCCAGGTGAGTGTGATCCCAGAGTCAACATATTGCTGTCCATTGTGAAATCATTTGGGTATCCAACAAAGTTTGCCAAGAATTGGAAAGGGAATGATCCTTGCACAGAATGGTTTGGGATTACATGTAACAATGGGAACATTACGGTTGTTAATTTTCAGAAAATGGGTCTTACTGGCACAATTTCTTCCAACTTCTCTTCATTAATATCACTTCAAAAGCTAGTTCTTGCCGACAACAATATCACAGGTTCCATTCCTAAGGAGCTTACTACTCTGCCTGCACTCACCCAACTTGACGTCTCAAACAACCAGCTTTATGGGAAAATCCCAAGTTTTAAGGGTAATGTGCTTGTGAACGCTAATGGTAACCCAGATATAGGAAAGGAGAAGGGTGGTTCTACTTCTCAAGGTGCCTCTTCTCAAGGCTCACCTGGTCCTTCCACAAATACAGGTTCCCAAGATAGTGGCAGTTCCATGAATGGTGGCAAGAAATCCTCAAGTTTAATTGGAATTATTGTATTTTCTGTAATCGGGGGTGTATTTGTGATTTTCTTGATAGGTTTGTTGGTTTTCTGTCTCTACAAAAGAAAACAAAAGCGATTTACCAGAGTACAGAGCCCAAATGCAATGGTTATTCATCCTCGCCATTCTGGCTCTGATAATGACAGTGTGAAGATCACAGTTGCAGGCTCGAGTGTTAGTGTTGGTGCCATAAGTGAAACCCATACTCATCCTAGTAGCGAGCCCAATGACATTCAAATGGTTGAAGCAGGAAATATGGTTATTTCGATTCAAGTTTTAAGGAATGTGACAAACAACTTCAGTGAAGAAAATATATTGGGACAAGGTGGATTCGGGACTGTCTACAGAGGTGAATTGCATGATGGTACAAAAATTGCAGTAAAGAGAATGGAGTCTGGGGTGATAACAGGAAAGGGACTAGCAGAGTTCAAGTCAGAAATTGCTGTTTTGACTAAGGTTCGGCACAGGCATCTAGTCGCTCTTCTTGGGTATTGCTTGGATGGCAACGAAAAGCTTCTTGTGTACGAATATATGCCTCAAGGGACACTCAGTAGGCATCTGTTCAGCTGGCCTGAAGAAGGGATAAAACCACTTGAATGGACTAGAAGGTTGGCTATTGCATTAGATGTAGCAAGGGGTGTTGAGTACCTCCATGGTTTAGCCCATCAGAGCTTTATACACAGGGACCTAAAGCCTTCAAACATTCTTCTTGGGGATGATATGAGAGCTAAGGTTGCCGATTTTGGTCTTGTGCGACTTGCTCCAGAGGGGAAAGGCTCAATTGAAACAAGAATTGCTGGAACTTTTGGATACTTGGCACCAGAATATGCAGTGACTGGTCGAGTGACTACTAAAGTGGACGTCTTCAGTTTTGGGGTGATTTTGATGGAGCTAATCACTGGGAGAAAAGCACTAGATGAGAGCCAGCCCGAGGAGAGCATGCACCTCGTGACATGGTTCAAAAGAATGCACATCAACAAGGACACTTTCAGAAAAGCCATTGACCCAACAATTGATGTTGATGAGGAAACACTCGCCAGTATCAGCACGGTTGCTGAACTTGCAGGTCACTGCTGTGCCAGGGAGCCATACCAAAGGCCTGATATGGGTCATGCTGTAAATGTTCTATCTTCTCTCGTAGAGCTCTGGAAACCTGTGGACCAAAACACAGAGGACATATATGGCATCGACCTTGACATGTCCTTGCCACAAGCCCTCAAGAAGTGGCAGGCATTTGAAGGAAGAAGCCACATGGATTCTTCTTCGTCTTCCTCATTCCTCGCAAGTTTGGACAACACTCAAACCAGCATACCCACTCGCCCATATGGATTTGCTGAATCGTTCACATCAGCAGATGGGAGGTAA 2847 0.4443 MKESYQILAIFVAGFCSLLLCAESQEDASVMLALKDSLSNSESLGWSGPDPCEWKHVVCSEDKRVTRIQVGRQGLQGTLPSSLGNLTELERLELQWNNISGPLPSLKGLSSLQVLMLSNNQFTYIPVDFFSGLSSLQSVEIDNNPFSAWEIPQSLKNASALQNFSANSANITGNIPDFLGPVAFPGLVNLHLAFNALVGGLPSALSGSLIESLWVNGQMSEEKLSGTIDVIQNMTSLKEVWLHSNAFSGPLPDFSGLKDLQSLSLRDNLFTGVVPVSLVNLGSLEAVNLTNNFLQGPVPEFKNSVAVDMTPDGNSFCLPKPGECDPRVNILLSIVKSFGYPTKFAKNWKGNDPCTEWFGITCNNGNITVVNFQKMGLTGTISSNFSSLISLQKLVLADNNITGSIPKELTTLPALTQLDVSNNQLYGKIPSFKGNVLVNANGNPDIGKEKGGSTSQGASSQGSPGPSTNTGSQDSGSSMNGGKKSSSLIGIIVFSVIGGVFVIFLIGLLVFCLYKRKQKRFTRVQSPNAMVIHPRHSGSDNDSVKITVAGSSVSVGAISETHTHPSSEPNDIQMVEAGNMVISIQVLRNVTNNFSEENILGQGGFGTVYRGELHDGTKIAVKRMESGVITGKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFSWPEEGIKPLEWTRRLAIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFKRMHINKDTFRKAIDPTIDVDEETLASISTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPVDQNTEDIYGIDLDMSLPQALKKWQAFEGRSHMDSSSSSSFLASLDNTQTSIPTRPYGFAESFTSADGR* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0876 948 ProSiteProfiles Protein kinase domain profile. 594 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0876 948 SMART LRR_typ_2 109 132 IPR003591 -
Vvi4g0876 948 SMART LRR_typ_2 234 256 IPR003591 -
Vvi4g0876 948 SMART LRR_typ_2 412 434 IPR003591 -
Vvi4g0876 948 SMART LRR_typ_2 86 108 IPR003591 -
Vvi4g0876 948 SMART LRR_typ_2 133 157 IPR003591 -
Vvi4g0876 948 SMART LRR_typ_2 257 280 IPR003591 -
Vvi4g0876 948 Gene3D Ribonuclease Inhibitor 23 324 IPR032675 -
Vvi4g0876 948 SUPERFAMILY L domain-like 50 432 - -
Vvi4g0876 948 SUPERFAMILY Protein kinase-like (PK-like) 568 878 IPR011009 -
Vvi4g0876 948 Gene3D Transferase(Phosphotransferase) domain 1 672 890 - -
Vvi4g0876 948 Pfam Protein kinase domain 595 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0876 948 FunFam receptor protein kinase TMK1 556 671 - -
Vvi4g0876 948 FunFam receptor protein kinase TMK1 672 889 - -
Vvi4g0876 948 CDD TM_EGFR-like 485 520 - -
Vvi4g0876 948 MobiDBLite consensus disorder prediction 448 480 - -
Vvi4g0876 948 SMART serkin_6 594 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0876 948 MobiDBLite consensus disorder prediction 443 480 - -
Vvi4g0876 948 Gene3D Phosphorylase Kinase; domain 1 554 671 - -
Vvi4g0876 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Vvi4g0876 948 CDD STKc_IRAK 600 873 - -
Vvi4g0876 948 Pfam Leucine rich repeat N-terminal domain 329 363 IPR013210 -
Vvi4g0876 948 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Vvi4g0876 948 PANTHER OSJNBA0070M12.3 PROTEIN 13 948 - -
Vvi4g0876 948 FunFam Receptor-like kinase TMK4 25 322 - -
Vvi4g0876 948 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Vvi4g0876 948 Gene3D Ribonuclease Inhibitor 326 450 IPR032675 -
Vvi4g0876 948 Pfam Leucine rich repeat 377 425 IPR001611 GO:0005515
Vvi4g0876 948 Pfam Leucine rich repeat 106 145 IPR001611 GO:0005515
Vvi4g0876 948 FunFam Leucine-rich repeat receptor-like kinase 326 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0876 Vvi-Chr4 13015677 13018823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0876 77 876 Receptor kinase-like Gene Family AT5G07280 33.414 2.62e-85 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vvi4g0876 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0876 K00924 - vvi:100265723 1808.11