Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0868 ATGGGCGACCGTACAAGCTCTGCTGTGACTAAGCCAATATGGATGAAGCAAGCGGAAGAGGCAAAGATCAAGAGCGAGGCTGAAAAAGCCGCCGCCGCCAAAGCTGCCTTCGAAGCCACATTCAAGGATGCCGCCTCCGCCTCCGCTCCTGCGGTGGCCGACTCCTCCTCTTCTGACAGTGACGACGCTGAAGAAGACGCCGAGAGTCGCCTCGCCAGCAAGCCCATCGGCCCCGTCGACCCCTCCAAATGCACGGCTGCTGGCGCTGGAATTGCGGGCGGGGCCGCCTGTTCGGCTTCGTCGTTCGTCGTCGTGACCAAGGATTCCGATGGCAGAAAGGTTCCCAATGGTGGCGCTCAGATTAGGGTTAGGGTTTCGCCTGGAGTGGGCGTCGGCGGATCGGACCAGGAGGGCATCATCAAGGACCAAGGCGATGGCAGCTACACTGTCACATATGTAGTGTCCAAGAGAGGGAATTATATGGTACACGTTGAGTGTAACGGCAAGCCCATTATGGGTAGTCCCTTTCCAGTTTTCTTCAGTGCAGGTACTGCTAGTGGAGGATTGTTGGGTTTGGCTCCTGCATCTACTTTTCCTAATCTAGTTAACCAGACAATGCCCAATATGCCAAATTATTCAGGGTCTGTTTCGGGGGCATTCCCCGGATTACTTGGAATGATTCCAGGCATTGTTCCTGGTGCTTCAGGAGGAGCAGTTTTACCTGGGATTGGAGCATCCCTTGGTGAAGTTTGTCGAGAGTACCTTAATGGACGTTGTGCCAAAACTGATTGCAAGTTTAATCACCCACCTCACAATTTGCTGATGACTGCATTAGCTGCAACCACCACCATGGGAACCCTCAGTCAAGTTCCGATGGCCCCTTCTGCAGCTGCAATGGCTGCTGCTCAGGCAATTGTTGCTGCCCAAGCCCTTCAAGCTCATGCTGCTCAGGTTCAAGCACAAGCCCAGTCAGCCAAAGACTCAGCTGGCTCTCCAGATAAAGTGGGGAAGGCTGATGCTCTTAAAAAAACACTACAAGTCAGCAATCTCAGCCCCCTTCTAACTGTGGAACAGTTGAAACAGCTTTTTAGTTTCTGTGGCACAGTTGTCGAATGTAGCATCACTGATTCAAAGCATTTTGCATATATAGAATACTCAAAACCCGAAGAAGCAACTGCTGCTTTGGCATTGAACAATATGGATGTTGGAGGTCGCCCATTAAATGTTGAGATGGCAAAGTCACTCCCTCCAAAACCAGCTATATTAAATTCTCCACTGGCTTCACCTTCTCTGCCCATGGTAATGCAGCAAGCAGTTGCCATGCAACAGATGCAATTTCAGCAGGCTCTGCTTATGCAACAAACAATGACTGCACAGCAGGCAGCTAATCGAGCTGCAACCATGAAGTCAGCAACAGAATTAGCATCAGCTAGAGCTGCAGAAATAAGTAAAAAGCTAAAAGCTGATGGATTTGTAGAGGAAGAGAAGGAAGAAAAGGAAGAAAATCGAAAATCTAGGTCGCCATCCATATCTCATGCAAGGTCAAAATCCAGGTCAAAATCACCTCTCCACTACCGGCGACGGCGGAGATCTCGTTCTTTTTCACCTCCATCCCGGTACTCAAGAGAGCACAGATCTAGATCACCATTTAGATCTCATCACTACTCAATTCATGACCATGGAAGCAGGTCATATAGAGACAATAAAGATGGCAGTGATAGATCTAGAAGGCGGGATTTGGATAGATCACATGATCATCATTTATCTAGCTCAAGGAGAAATAGGAGTAGGAGTCGAAGCCCTAGAACTAGAAAATCATATCGAGCTGATTCAGAATCACCAAAACGCCGTGTAGAGAGTTCATCACATAGAACCAGGAAATCATCTCGTGTTAGTCCAAAATCACCAAGACATCACAGGGGAAGTAGGTCATCACCTAGAAATGATGATGACAACAAATCAAAACGGAGAAGGCGGTCCCGGTCAAAATCTGTGGAAGGTAAGCATTATTCTAATGAAAAAATAGATGAAAGACGAGATAAAAAATCAAAGCATCGTGACAGAAGGCGGTCCAGGTCAATATCAGCAGAGGGAAAGCATCATAAAGGAAGTGGCTTCTCCCCACGAAGTTTTGATGACAGCAAATCAAAGCATAGAAAGCGATCCAGGTCAAAATCTGCAGAAGGTAAGCGTGTTTTAAGTGACAAAACAGATGAAGGCAGAGATGAGAAAGGGAAGCATCATGAAAAGAGGCGTTCCAGGTCACGATCAGCAGAAGGTAAGTACTGTAGACTAAATAGGTTATCTCCTAAAAGTTCTGATGAAATCAGACCAAAACATAGAAGACATTCAAGGTCAAGATCTGCAGAATATAGGCGTTCAGATAATAAAGGAGATGAAAAATTAATGCATCACAAGGAACCAAAAGAACGTGAAGTCACTGAGGACTTGAAGGAACCTAGCAAACATAAGATGCCAAAAATAGAGGACATGGAGCTGGCCACAACAGGAGTGGAAGACCAAGGTGGAGGTGAAAAATCAGCTGAGGTGGTTGGCAGAACTGGTTTCAGCGAGGGTCAGGGTTATGTCAATGATGACGGGAAGGATAAATCAGAAAACTTGATGATTGCAGATCCCCCTGCTTTGAATGTTCATATCACCAACACTGTGTCATCTGATGCAGATTTGAGTTATGGGGTCTTCAGGGCAGAAGATGTTAATCGAAACAAAGAAGATGTCAATGAATGGGACATCTATGAGAAGAGCTCTGGTCTTGTTTGA 2781 0.4678 MGDRTSSAVTKPIWMKQAEEAKIKSEAEKAAAAKAAFEATFKDAASASAPAVADSSSSDSDDAEEDAESRLASKPIGPVDPSKCTAAGAGIAGGAACSASSFVVVTKDSDGRKVPNGGAQIRVRVSPGVGVGGSDQEGIIKDQGDGSYTVTYVVSKRGNYMVHVECNGKPIMGSPFPVFFSAGTASGGLLGLAPASTFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGIVPGASGGAVLPGIGASLGEVCREYLNGRCAKTDCKFNHPPHNLLMTALAATTTMGTLSQVPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQAQSAKDSAGSPDKVGKADALKKTLQVSNLSPLLTVEQLKQLFSFCGTVVECSITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPLASPSLPMVMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATELASARAAEISKKLKADGFVEEEKEEKEENRKSRSPSISHARSKSRSKSPLHYRRRRRSRSFSPPSRYSREHRSRSPFRSHHYSIHDHGSRSYRDNKDGSDRSRRRDLDRSHDHHLSSSRRNRSRSRSPRTRKSYRADSESPKRRVESSSHRTRKSSRVSPKSPRHHRGSRSSPRNDDDNKSKRRRRSRSKSVEGKHYSNEKIDERRDKKSKHRDRRRSRSISAEGKHHKGSGFSPRSFDDSKSKHRKRSRSKSAEGKRVLSDKTDEGRDEKGKHHEKRRSRSRSAEGKYCRLNRLSPKSSDEIRPKHRRHSRSRSAEYRRSDNKGDEKLMHHKEPKEREVTEDLKEPSKHKMPKIEDMELATTGVEDQGGGEKSAEVVGRTGFSEGQGYVNDDGKDKSENLMIADPPALNVHITNTVSSDADLSYGVFRAEDVNRNKEDVNEWDIYEKSSGLV* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0868 926 MobiDBLite consensus disorder prediction 620 641 - -
Vvi4g0868 926 CDD RRM_SF 345 410 - -
Vvi4g0868 926 Coils Coil 15 36 - -
Vvi4g0868 926 ProSiteProfiles Zinc finger C3H1-type profile. 250 271 IPR000571 GO:0046872
Vvi4g0868 926 ProSiteProfiles Filamin/ABP280 repeat profile. 76 180 IPR017868 -
Vvi4g0868 926 Gene3D Immunoglobulins 78 185 IPR013783 -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 491 874 - -
Vvi4g0868 926 Pfam Filamin/ABP280 repeat 78 176 IPR017868 -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 727 746 - -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 45 79 - -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 509 535 - -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 690 717 - -
Vvi4g0868 926 SMART rrm1_1 344 410 IPR000504 GO:0003723
Vvi4g0868 926 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 414 IPR000504 GO:0003723
Vvi4g0868 926 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 284 680 - -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 603 619 - -
Vvi4g0868 926 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 407 IPR000504 GO:0003723
Vvi4g0868 926 Gene3D - 302 420 IPR012677 -
Vvi4g0868 926 SUPERFAMILY E set domains 78 178 IPR014756 -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 536 588 - -
Vvi4g0868 926 SUPERFAMILY RNA-binding domain, RBD 320 420 IPR035979 GO:0003676
Vvi4g0868 926 Coils Coil 308 328 - -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 491 508 - -
Vvi4g0868 926 SMART flmn_3 80 183 IPR001298 GO:0005515
Vvi4g0868 926 MobiDBLite consensus disorder prediction 642 656 - -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 665 682 - -
Vvi4g0868 926 MobiDBLite consensus disorder prediction 788 834 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0868 330 413 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 8.52e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0868 - - vvi:100244513 1383.24