Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0855 ATGGGCTCTAGTGGAGTGAACTTTTCAGCATTGAGGATAAAGAAGGGACCAACAAATCAATGTGTTTGCCTGGTTGATGCATTGGGCAACCGTACTATGCGGCCCTGTCTCTCAAGTGTTGTTAAGATTCAGGCAGAGGAATTAACTAAAGAGGATTTTAAAGGGGTAAAGTGGTTGGTAATGAGATATGGGATATATAATTTGGAAGTTATTCATGCTGCAATTCAGATGGCCAAAGAGGAGGGCATATTTGTATCCTTGGATTTGGCCAGTTTTGAGATTGGCCAGGGAACTTACAGTAATGTTTACAGGGCTCGTGATCTGGACCAACGGAAAATTGTTGTTTTGAAGAAAGTTAGGTTTGATAACCTGGAGCAAGAGAGTGTCCGCTTTATGGCAAGGGAAATTCATGTTCTGCACAGGCTTGATCATCCAAATATAATAAAACTGGAAGGTCTAGTCACATCAAGGATGTCTTGCAGCTTGTATCTTGTTTTTGAGTACATGGAACATGATCTAGAAGGTCTCGCCTCACACCCTGGTCTCAAGTTTACAGAACCACAGGTTAAATGTTATATGCAACAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGTATCGTGATATAAAGGGTTCCAACCTTCTAATTGACAACAGTGGCATCTTGAAGATAGCAGACTTTGGTTTGGCAAGTTTTTTTGATCCCCATCAAATCCAGCCACTGACAAGCATTGTGGTAACACTTTGGTACCGGCCACCTGAGCTCTTACTTGGAGCCACTTACTATGGGACTGTTGTGGATTTATGGAGCACTGGTTGTATACTGGCTGAACTATATGCTGGCAAGCCTATAATGCCAGGAAGAACAGAGGTGGAACAGTTGCATAAAATTTTCAAGCTTTGTGGCTCTCCATCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCTTATAGGCGCTGTGTTGCAGAAACATTTAAAGACTTTCCTACACCTGCATTAGGGCTTATGGAAACACTTCTTTCCATAGATCCTGCTGATTGTGGATCTGCAGCCTCTGCTTTTAAAAGTGAGTTCTTTACAGTAAAGCCACTTCCTGGTGATCCTTCAAGCTTGCCTAAGTATCCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGCTATTATGCCCCTTCAATTGCTGATACTAGTTATCATTCCATTTGTTGGATTTTAATGGTTCGGAACTTTAGAGGAACTCTTCTAGAGTTACTGCAATAA 1311 0.4172 MGSSGVNFSALRIKKGPTNQCVCLVDALGNRTMRPCLSSVVKIQAEELTKEDFKGVKWLVMRYGIYNLEVIHAAIQMAKEEGIFVSLDLASFEIGQGTYSNVYRARDLDQRKIVVLKKVRFDNLEQESVRFMAREIHVLHRLDHPNIIKLEGLVTSRMSCSLYLVFEYMEHDLEGLASHPGLKFTEPQVKCYMQQLLRGLDHCHSRGVLYRDIKGSNLLIDNSGILKIADFGLASFFDPHQIQPLTSIVVTLWYRPPELLLGATYYGTVVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALGLMETLLSIDPADCGSAASAFKSEFFTVKPLPGDPSSLPKYPPSKEFDAKVRDEEARSYYAPSIADTSYHSICWILMVRNFRGTLLELLQ* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0855 436 Gene3D Phosphorylase Kinase; domain 1 108 170 - -
Vvi4g0855 436 Gene3D - 1 107 IPR029056 -
Vvi4g0855 436 CDD STKc_CDK9_like 92 372 - -
Vvi4g0855 436 FunFam probable serine/threonine-protein kinase At1g54610 171 410 - -
Vvi4g0855 436 Pfam Protein kinase domain 93 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0855 436 SUPERFAMILY Ribokinase-like 3 92 IPR029056 -
Vvi4g0855 436 ProSiteProfiles Protein kinase domain profile. 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0855 436 SMART serkin_6 93 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0855 436 PANTHER CELL DIVISION PROTEIN KINASE 93 378 - -
Vvi4g0855 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vvi4g0855 436 Gene3D Transferase(Phosphotransferase) domain 1 171 411 - -
Vvi4g0855 436 FunFam Kinase family protein 108 170 - -
Vvi4g0855 436 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Vvi4g0855 436 SUPERFAMILY Protein kinase-like (PK-like) 93 374 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0855 Vvi-Chr4 11555570 11559897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0855 93 403 Core Cell Cycle Gene Families AT5G10270 51.988 2.20e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi4g0855 Pkinase 8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0855 - - vvi:104879100 802.742