Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0852 ATGGGTAAATTTGTCCTAAAAAATTTCGTAATACACGGAGTTTTGATGTCTCCAAACTGTACACCTACAGTGCCAAAAGTCTGTGCAATGGAAAGGTTTCTGAAATGGGCGACGGAGCTGGGAATCTCGGACTTCACCACCACCCCCACCACCGTTCCGTCTCGTCTTCAAATCCCTCATTGTTGTGTGGGCCACTCTCTCTGCGTCTCTCACTTTCCTCACGCAGGCGGTAGAGGCTTGGCGGCTGCGCGTGATCTCAGTCAAGGGGAGTTGATTCTCACAGTTCCCAAATCGGCCTTGATGACGAGCCAAAGTCTGTTGAAAGATGAGAAGCTCTCTGTTGCTGTCAAAAGGCACACCTCTCTCTCCTCTCCTCAGATATTGACTATTTGTTTGTTAGCCGAAATGAGCAAAGGAAAGAGTTCTTGGTGGCATCCTTACTTAATGCAGTTGCCACGAAGTTATGATACACTAGCCAATTTCAGTCAATTTGAGAAACAAGCCCTTCAAGTGGATGATGCCATATGGGTTACGGAGAGGGCTATATTGAAGGCCGAATTGGAGTGGAAAAAGGCAATTCCCCTAATGGAAGAACTTAAGTTGAAGCCTCAGCTTCAAAATTTCAGGGCATGGCTCTGGGCTTCTTCAACTGTATCCTCACGCACGATGCATATACCATGGGATGACGCTGGATGTTTATGCCCTGTTGGGGACTTCTACAATTATGCTGCCCCTGGAGAAGAACCATGTGGCTGGGAAGATTTGAAGGGTTCAAGAAATGAATCTTCCTTGCAAGATAGTTCTTTCTGGAATAAGGATGCTACTAGCAATTCAGATGCAGAGCAAGATGATGTTCTCTCCCAGAGGTTAACAGATGGGGGCTACAAGGAAGATCTTGCTGCATATTGCTTCTATGCTAGGAAAAATTATAAAAAAGGAGAGCAGGTTCTTTTAAGCTATGGAACATACACGAATTTGGAACTTCTTGAACACTATGGGTTTCTTTTAGATGAAAACCCAAATGATAAGGCTTTCATTCCCTTGGAACCTGAAGTTTATGCCTCCAGTTCATGGCCAAAGGACTCGTTGTACATTCATCAAAATGGGAAGCCGTCTTTTGCTCTACTATCTGCTCTTCGGTTGTGGGCAACCCCGGCAAGCCAGCGAAGATCTGTTGGTCACCTTGTTTATTCTGGAACTCAATTGTCATCAGAGAATGAAATATTTGTGATGGAATGGATAGCGAAGAGTTGCCATGTTGTTTTGGAGAATTTGCCAACATCAGTTGAAGAAGACAGTCTGCTGCTGTGTGCCTTAGACAAAATGCAAGATCCCGACCTCCCAATGGAGGTTGGGAACGCTTTGAGGAGCTCTGGAGTTGAATTTTCTGCCTTCTTGGAGGCCCATGACCTGAAAATTGGGGACGGCAATGTTGGGTTACTCTTGTCGGAGAAGGCAAGAAGGTCGATGGAGAGATGGAAATTAGCAGTGCAGTGGAGACTGAGGCATAAAAGAATACTTGTTGATTGTATTTCCCGTTGTACTGAAATCATTAGTTCTCTTTCCCCAACATTTCTTGGACACCGAGGCTATCAATCCTAG 1602 0.4519 MGKFVLKNFVIHGVLMSPNCTPTVPKVCAMERFLKWATELGISDFTTTPTTVPSRLQIPHCCVGHSLCVSHFPHAGGRGLAAARDLSQGELILTVPKSALMTSQSLLKDEKLSVAVKRHTSLSSPQILTICLLAEMSKGKSSWWHPYLMQLPRSYDTLANFSQFEKQALQVDDAIWVTERAILKAELEWKKAIPLMEELKLKPQLQNFRAWLWASSTVSSRTMHIPWDDAGCLCPVGDFYNYAAPGEEPCGWEDLKGSRNESSLQDSSFWNKDATSNSDAEQDDVLSQRLTDGGYKEDLAAYCFYARKNYKKGEQVLLSYGTYTNLELLEHYGFLLDENPNDKAFIPLEPEVYASSSWPKDSLYIHQNGKPSFALLSALRLWATPASQRRSVGHLVYSGTQLSSENEIFVMEWIAKSCHVVLENLPTSVEEDSLLLCALDKMQDPDLPMEVGNALRSSGVEFSAFLEAHDLKIGDGNVGLLLSEKARRSMERWKLAVQWRLRHKRILVDCISRCTEIISSLSPTFLGHRGYQS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0852 533 Gene3D - 351 523 IPR036464 -
Vvi4g0852 533 MobiDBLite consensus disorder prediction 263 285 - -
Vvi4g0852 533 Gene3D set domain protein methyltransferase, domain 1 28 335 - -
Vvi4g0852 533 SUPERFAMILY SET domain 30 339 IPR046341 -
Vvi4g0852 533 Pfam SET domain 77 321 IPR001214 GO:0005515
Vvi4g0852 533 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 331 517 IPR036464 -
Vvi4g0852 533 CDD SET_LSMT 66 335 - -
Vvi4g0852 533 ProSiteProfiles SET domain profile. 65 321 IPR001214 GO:0005515
Vvi4g0852 533 MobiDBLite consensus disorder prediction 263 284 - -
Vvi4g0852 533 FunFam Protein SET DOMAIN GROUP 40 339 452 - -
Vvi4g0852 533 FunFam Protein SET DOMAIN GROUP 40 30 335 - -
Vvi4g0852 533 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 30 493 - -
Vvi4g0852 533 Pfam Rubisco LSMT substrate-binding 370 507 IPR015353 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0852 77 349 NAC Transcription Factor Family AT3G56570 21.951 4.26e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi4g0852 SET 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0852 - - vvi:100261646 1080.47