Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0848 ATGGCTCTGTCGGAGACGGCATCAGAGTCCAATGCCTCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAATAAACGACGAGCTGATGCTGGATGGGAACCCGAGGCTGAACCTGGCTTCATTTGTGACAACATGGATGGAACCAGAGTGCGATAAGCTAATCATGGCCTCCATTAACAAGAACTACGTTGATATGGACGAGTACCCTGTCACCACTGAGCTACAGAATCGCTGCGTAAACATGATAGCACATCTATTTAATGCACCACTTGGAGAGTCGGAGGCAGCAGTTGGTGTGGGAACAGTGGGATCTTCAGAGGCAATAATGCTTGCTGGTTTGGCATTCAAGAGGAAGTGGCAAAACAAGAGGAAAGCTGAGGGCAAACCCCATGACAAGCCTAACATTGTTACTGGAGCTAATGTTCAGGTGTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAATTGAAGGAAGTGAAGCTGACGGATGGCTACTATGTGATGGACCCTGTCAAAGCAGTGGAGATGGTGGACGAGAACACCATCTGTGTTGCTGCTATCCTTGGTTCTACCCTCAATGGAGAATTCGAAGATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCCTTTCTTCACCCAGAGCTGGAGTGGGACTTCCGCTTGCCACTTGTGAAAAGCATTAATGTTAGCGGCCACAAGTACGGGCTTGTGTATGCTGGCATAGGTTGGGTGATTTGGAGGAGTAAAGAGGACTTGCCCGATGAGCTCATCTTTCATATCAACTATCTTGGAGCCGACCAACCTACCTTCACCCTCAACTTCTCCAAAGGTTCTAGTCAAGTTATTGCTCAGTATTATCAACTCATTCGCTTGGGCCATGAGGGATATAGGAACATTATGGAAAACTGTCAAGAAAATGCAAGGGTGCTCAAAGAAGGATTGGAGAAGACAGGGCACTTCAACATTGTGTCTAAAGAGAATGGAGTGCCATTAGTAGCCTTCTCTTTGAAAGACAACAGCTGTCACAATGAGTTCGAGGTGTCAGACATGCTGCGACGCTATGGATGGATCGTGCCAGCTTATACCATGCCGCCGGATGCACAACATGTGACTGTTCTTCGTGTCGTCATAAGAGAAGATTTCTCGCGCACACTTGCTGAGCGTCTGGTCACAGATATCCAAAAAGTCCTATATGAGCTCGATACTCTCCCCGCTAAGATTACAGCCAAGGTCCAACAGAGCAACAAGAAGAGTGAAATTGAGACACAGAGGGAGATCACCGAAGCTTGGAAGAAGTTCGTCAGGGAGAAGAAGAAGACTAATGGCGTTTGTTAG 1467 0.4697 MALSETASESNASIHSTFASRYVRVSLPRFKIPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTDGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKHLNDLLTKKNKETGWDTPIHVDAASGGFIAPFLHPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNIMENCQENARVLKEGLEKTGHFNIVSKENGVPLVAFSLKDNSCHNEFEVSDMLRRYGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVTDIQKVLYELDTLPAKITAKVQQSNKKSEIETQREITEAWKKFVREKKKTNGVC* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0848 488 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi4g0848 488 CDD DOPA_deC_like 59 439 - -
Vvi4g0848 488 Gene3D - 1 65 - -
Vvi4g0848 488 FunFam Glutamate decarboxylase 66 360 - -
Vvi4g0848 488 SUPERFAMILY PLP-dependent transferases 14 443 IPR015424 -
Vvi4g0848 488 FunFam Glutamate decarboxylase 1 65 - -
Vvi4g0848 488 PANTHER GLUTAMATE DECARBOXYLASE 1 488 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi4g0848 488 FunFam Glutamate decarboxylase 361 448 - -
Vvi4g0848 488 Gene3D - 66 360 IPR015421 GO:0003824
Vvi4g0848 488 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi4g0848 488 Gene3D - 361 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0848 Vvi-Chr4 11271874 11277992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0848 1 488 Calmodulin-binding Proteins AT5G17330 84.462 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0848 K01580 - vvi:100256481 989.178