Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0840 ATGGAGTTTCGGACCGGAGGAAATGGCTCCGGTGGTGATCAAGATGGTCCCAATCCTCGAAGAGGGAGGAAAGTGTACAATCGCCACACTCCTCAGCAGATTCAGCGCCTTGAAGCGTTTTTCAAGGACTGCCCCCATCCAGATGAAGCCCAGAGGCGTCAGTTGGGCAGGGAATTGGGGCTTGAGTCCCGCCAGATCAAGTTTTGGTTTCAGAACAAGCGTACTCAAACAAAGACTCAACATGAGCGCGCAGATAACACTGCCCTTCGGGCCGAGAATGAAAGGATCCAATGTGAAAACCTTGCAATCAGAGAGGCACTGAAGAATGTGATCTGCCCATCGTGTGGGGGTCCACCCTTCGGGGAAGAAGAACGGCAGCGTAACATAGAGAAGCTTCAGCTTGAAAACGCCCAATTGAAAGAAGAGCATGAAAAGGTATCAAATCTTCTTGCCAAGTACATAGGGAAACCCATTACACAAATGCATTTGCTGCCACCTGCCCTTGGATCTTCTTTGGATTTTTCACCAGGAAGTTTCCCAAGCCAAGAGACAGGAGGCCTTTCCATCCCCACAGTAGGCCCTGCCCTAGGCCTTGAACTTGCTCCCGTGGATGTTTGCAATGCTTCAGTGATGTATCAATTTAAGGGATTCCCAGATATGGAAAAGACGCTCATGACTGAGACTGCTGCCGGTGCCATGGATGAATTAATCAGGCTTGTGCGTATCAATGAGCCTTTGTGGGTCAAGTCCGCCACTAATGAAAAATATGTTCTTCACCATGACAGCTATGAAAGAATTTTCCCCAAGGCTACTCACTTCAAAAGTTCAAATGCTCGAATTGAATCATCAAAGGAATCAGTCGTGGTGGCCATGAATGGAATGCAGCTGGTCAACATGTTTCTGGATCCAAATAAATATGTCGATCTCTTTCCCACAATCGTTACCAAAGCAAGCACAATTCAAGTTCTTGAGGCTGGAATAATTGGAAGCCGGAGTGGTTCCTTGCAATTGATGTATGAACAGATGCATATTCTTTCACCTCTTGTAGCACCTAGAGAATTCTACTTTCTTCGTTATTGCCAGCAAATTGAGCTAGGCGTGTGGGTGATGGTGGATGTGTCCTATGATTACTCCAAAGATGGCCAACCAAACTCTTTGCGATTTTGGAAACTTCCTTCTGGATGCATGATTCAAGACTTGCCTGATGGCTGCTCCAAGGTTACTTGGGTAGAACATGTTGAAGTGGATGACAAAAGTCTAACGCATCGGCTCTATAGAGATCTTGTCTCCGGTAGCTTAGCCTTCGGGGCAGAAAGAATGGTCGGTACTCTTCAAAGGATGTGCGAGAGGCTCGCTTACTTGGCAGATGAAAATACACCGACTCGTGATCTTGCAGGAGTGATTAGCTTGCCTGAAGGGAGGAGAAGTATAATGAAGCTTGGTCACAGGATGGTGAAAGATTTTTGTGGGGTTTTAAGCATGTCTGGAAAACTAGACTTTCCTCAGTTATCTGAAGTGGACACTAGCGGTGTCAGAGTCTCTGTTCGCAAGAGCACAGAACCCGGCCAACCTGGTGGCCTGATTGTCAGCGCTGCGACCTCCCTTTGGCTCCCCATGCAATGTCAGACTATATTTGATTTCATCAGAGATGAGAAAATGCGACCTCAGTGGGACGTTCTGTCCAGTGGAAATCCAGTGCATGAGATTGCACATATCGCAAATGGAGTTAATCCAGGGAACTGTACAAGTATCATTCGGCCTTTTGTCCCCACCGAGAACAACATGCTCATGCTTCAAGAGAGCTGCGTGGAGCCTCTGGGAGGCTTGGTGGTCTATGCCCCCATTGACATACCGGCCATCAACGTTGCAATAAGGGGAGAGGAGTCTGGAAACATACCCATTCTTCCATCTGGGTTCATAGTCTCTGGAGATGGCCGTTCCGACTCAGGAGCCGGATGTACATCTGACGGGAATATCATGGGGTCGGGCGGTTCCCTTCTTACAGTGGCTTTCCAAGTACTGGTTTGTGGCCCTGCGGCTCCGCAGCAGCAGCTGAACATGGAGTCGGTCGCCACTGTCAATACTCTTATTAGCTCCACCGTTCAAAAAATTAAGATTGCCTTGAATTGTTCTGGTTTGGATTGA 2145 0.4797 MEFRTGGNGSGGDQDGPNPRRGRKVYNRHTPQQIQRLEAFFKDCPHPDEAQRRQLGRELGLESRQIKFWFQNKRTQTKTQHERADNTALRAENERIQCENLAIREALKNVICPSCGGPPFGEEERQRNIEKLQLENAQLKEEHEKVSNLLAKYIGKPITQMHLLPPALGSSLDFSPGSFPSQETGGLSIPTVGPALGLELAPVDVCNASVMYQFKGFPDMEKTLMTETAAGAMDELIRLVRINEPLWVKSATNEKYVLHHDSYERIFPKATHFKSSNARIESSKESVVVAMNGMQLVNMFLDPNKYVDLFPTIVTKASTIQVLEAGIIGSRSGSLQLMYEQMHILSPLVAPREFYFLRYCQQIELGVWVMVDVSYDYSKDGQPNSLRFWKLPSGCMIQDLPDGCSKVTWVEHVEVDDKSLTHRLYRDLVSGSLAFGAERMVGTLQRMCERLAYLADENTPTRDLAGVISLPEGRRSIMKLGHRMVKDFCGVLSMSGKLDFPQLSEVDTSGVRVSVRKSTEPGQPGGLIVSAATSLWLPMQCQTIFDFIRDEKMRPQWDVLSSGNPVHEIAHIANGVNPGNCTSIIRPFVPTENNMLMLQESCVEPLGGLVVYAPIDIPAINVAIRGEESGNIPILPSGFIVSGDGRSDSGAGCTSDGNIMGSGGSLLTVAFQVLVCGPAAPQQQLNMESVATVNTLISSTVQKIKIALNCSGLD* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0840 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 709 IPR042160 -
Vvi4g0840 714 FunFam Homeobox-leucine zipper protein HDG1 10 96 - -
Vvi4g0840 714 SMART HOX_1 22 84 IPR001356 GO:0003677
Vvi4g0840 714 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Vvi4g0840 714 Pfam Homeodomain 24 78 IPR001356 GO:0003677
Vvi4g0840 714 Pfam START domain 230 450 IPR002913 GO:0008289
Vvi4g0840 714 CDD homeodomain 20 81 IPR001356 GO:0003677
Vvi4g0840 714 Coils Coil 122 156 - -
Vvi4g0840 714 Gene3D - 10 96 - -
Vvi4g0840 714 CDD START_ArGLABRA2_like 222 449 - -
Vvi4g0840 714 SUPERFAMILY Bet v1-like 219 452 - -
Vvi4g0840 714 SUPERFAMILY Bet v1-like 469 699 - -
Vvi4g0840 714 SUPERFAMILY Homeodomain-like 9 80 IPR009057 -
Vvi4g0840 714 ProSiteProfiles START domain profile. 218 453 IPR002913 GO:0008289
Vvi4g0840 714 SMART START_1 227 450 IPR002913 GO:0008289
Vvi4g0840 714 MobiDBLite consensus disorder prediction 1 25 - -
Vvi4g0840 714 Gene3D - 226 443 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0840 Vvi-Chr4 10997910 11025564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0840 21 709 Homeobox Transcription Factor Family AT1G73360 48.927 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi4g0840 START 5.9e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0840 K09338 - vvi:100254711 1434.85