Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0838 ATGTGGAGAGATTCGGGGAAAAATCAGTGGAAACAGTCTACAACACTCTCAAGTAAAACCAAAGCTGCCATCGCTCTCTCTCTCTCTCTCAAACCAGACAGCAAAAAGAAAAATAATAAAAGAAAAATGACAGCTGCTATGATACGAGCTCCAACATTCCTCCTCCTCCTCCTCCAGCTGTTATTCACGACAGTGGCCGCCCACTTCTCTTCCTCATCATCATCATCCTCCTCCTCCTCTTCATCGGCCACACTCTCAGAGTGGAGATCTGGGCGAGCAACTTACTACGCGGCGGCGGACCCAAGAGACGCGGTGGGGGGCGCGTGCGGGTACGGAGACTTGGTCAAGAGTGGATATGGAATGGCGACGGTGGGACTGAGCGAGGCGCTGTTCGAGAGGGGCCAGATCTGCGGGGGATGCTTCGAGCTGAGGTGCGTGGACGACCTCCGCTGGTGCATTCCGGGGACGTCCATCATCGTCACGGCCACCAACTTCTGCGCCCCTAACTATGGGTTCCCGGCGGACGGCGGGGGGCACTGCAACCCTCCCAACAACCACTTTGTTCTCCCCATTGAGGCCTTTGAGAAGATCGCTATTTGGAAGGCTGCCAACATGCCTGTCCACTATCGGAGGATCAAATGCAGAAAAGAAGGCGGTGTTCGATTTTCACTTGATGGATCAGGTATATTCTTATCAGTGCTGATCAGCAATGTGGGTGGCGCTGGAGACATAGTGGGAGTGAAGGTAAAGGGTTCAAGAACAGGATGGCTTCCAATGGGCAGGAATTGGGGTCAGAACTGGCATCTCAATGCTGATTTAAAGAATCAGCCTCTTTCCTTTGAGATCACTGCTAGCGATGGAATCACCCTCACATCTTACAATGTTGCTCCCAAGGGTTGGAATTTTGGACAGACTTTTGAAGGCAAGCAATTTGAATCTTAA 942 0.5191 MWRDSGKNQWKQSTTLSSKTKAAIALSLSLKPDSKKKNNKRKMTAAMIRAPTFLLLLLQLLFTTVAAHFSSSSSSSSSSSSSATLSEWRSGRATYYAAADPRDAVGGACGYGDLVKSGYGMATVGLSEALFERGQICGGCFELRCVDDLRWCIPGTSIIVTATNFCAPNYGFPADGGGHCNPPNNHFVLPIEAFEKIAIWKAANMPVHYRRIKCRKEGGVRFSLDGSGIFLSVLISNVGGAGDIVGVKVKGSRTGWLPMGRNWGQNWHLNADLKNQPLSFEITASDGITLTSYNVAPKGWNFGQTFEGKQFES* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0838 313 SMART dpbb_1 123 209 IPR007112 -
Vvi4g0838 313 SUPERFAMILY Barwin-like endoglucanases 87 237 IPR036908 -
Vvi4g0838 313 CDD DPBB_EXPA_N 87 214 - -
Vvi4g0838 313 Pfam Lytic transglycolase 124 209 IPR009009 -
Vvi4g0838 313 Gene3D - 71 215 IPR036908 -
Vvi4g0838 313 Gene3D - 220 311 IPR036749 -
Vvi4g0838 313 SUPERFAMILY PHL pollen allergen 216 308 IPR036749 -
Vvi4g0838 313 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 229 308 IPR007117 -
Vvi4g0838 313 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 106 219 IPR007112 -
Vvi4g0838 313 PRINTS Expansin/Lol pI family signature 87 102 IPR007118 GO:0005576
Vvi4g0838 313 PRINTS Expansin/Lol pI family signature 105 123 IPR007118 GO:0005576
Vvi4g0838 313 PRINTS Expansin/Lol pI family signature 127 145 IPR007118 GO:0005576
Vvi4g0838 313 PRINTS Expansin/Lol pI family signature 294 308 IPR007118 GO:0005576
Vvi4g0838 313 PRINTS Expansin/Lol pI family signature 202 218 IPR007118 GO:0005576
Vvi4g0838 313 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Vvi4g0838 313 PRINTS Expansin signature 218 230 IPR002963 GO:0009664
Vvi4g0838 313 PRINTS Expansin signature 194 207 IPR002963 GO:0009664
Vvi4g0838 313 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Vvi4g0838 313 PRINTS Expansin signature 265 286 IPR002963 GO:0009664
Vvi4g0838 313 PRINTS Expansin signature 294 310 IPR002963 GO:0009664
Vvi4g0838 313 PRINTS Expansin signature 158 168 IPR002963 GO:0009664
Vvi4g0838 313 PRINTS Expansin signature 145 156 IPR002963 GO:0009664
Vvi4g0838 313 PRINTS Expansin signature 118 132 IPR002963 GO:0009664
Vvi4g0838 313 PRINTS Expansin signature 177 194 IPR002963 GO:0009664
Vvi4g0838 313 Pfam Expansin C-terminal domain 220 297 IPR007117 -
Vvi4g0838 313 PANTHER EXPANSIN-A15 61 311 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0838 Vvi-Chr4 10905206 10909691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0838 68 313 Expansin Gene Family AT3G03220 82.114 4.49e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0838 - - vvi:100249605 600.897