Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0837 ATGACTGTTGAGGATCAAAGTGGAGGTAGTCGTTCAAATACCTTTCTATCAGCTGGTAATCTAATTTCATTGGATGCTGGGACTCATTCTTTAACTGCTGCTGAGCTGAAGGAGCAATTTTCTTGCAGAGATGACCTGGCTCCCAAGGCTAGGAAACCATACACAATTACCAAACAAAGAGAAAGATGGACTGAAGAAGAGCATAAGAAGTTTCTTGAAGCTTTAAAGCTGTATGGTCGGGCTTGGAGGCGTATAGAAGAGCATGTGGGCACCAAGACTGCAGTTCAGATTCGAAGCCATGCCCAGAAGTTTTTCTCTAAGGTGGTTCGGGAAACAAGTGGTGGCAACACAAACTCAGCAGAACCTATTGAGATTCCTCCTCCCAGACCAAAACGAAAACCTGTTCACCCTTATCCCCGTAAACTGGTGCACCCACTTAGAAAAGGAATCTCAGTTCTTGAGCCGCCAGTGAGATCTGTATCACCAAATTTTTCGGCTTCAGAACAAGAAAACCAGTCCCCCACATCAGTATTATCAGCAGTTGGTTCAGAGACACTGGGTTCCACACTTTCAAATACACAGAATGGTAGCCCATCTCCAGTTTCATCTGCGGCTGGTGTCAACCCAGATAGAATGTTTCTCCCTGAACTCAATCCACCAACCGAGGAAAATGCATCTCCATCCCCGGTCTTAACGACATCTAGCTCTGTTCCGGATGAACCTTTACCCATGAAGTTCGAGTTGTTTCCACAGGAAATATTTGCTAAAGAATGTTCGGTCGAGGAAGCATCCACCCGAACTCTTAAGCTATTTGGGAGGACTGTATTAGTGACAGATTCCCACAGGCCATCTTCTCCAACAACCTCTAAGTCTCAGCCTTCAGACATTAATAACGAGGGAATGCATGTTGAAACATTACCATGGAACTCAACACCCACAGAATCTTCTCCCGAGAATTCAAGTTTTTCATGGAGTCATTTGCAACCTCAACCATCAGGGGCTTTCTATTACATGCATTTCCAGAAAGAGGATTCAAATTGTGTAGAAGCTGGTACCACTGCTCCCCTGCCATGGTGGACCTTTTATGGGGGCATACCAATTCCTTTCCTTCCGCTCCATCATCAGGACTCGATCAAAGCACATGAAGACACAAAATTTGCTGAAACTCATGACAAAGAGATTCAGAAGGAAGGATCTTGGACAGGGTCAAATACTGGATCAGTGAACGAGGGGGGCAATTGTGATACAAATTGGGATGTTGAAACCCAGAGCCACCAACCTTATTTAGACACGATGGAAAAAGAATCAGACTCAGCTTTCGAGTTAAAGTTGAGCGAGAGATCAGCCTTCTCTAGAGGAAGAACAAACACGGACAAGTGTGTGAAGGGGTTTATGCCATATAAAAGATGTTTGGCAGAGAGAGACACCCAGTCATCAATAATAATTGGGAACGAGAGGGAGGAGCAGAGGATCCGCCTTTGCTTGTAG 1488 0.4503 MTVEDQSGGSRSNTFLSAGNLISLDAGTHSLTAAELKEQFSCRDDLAPKARKPYTITKQRERWTEEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVVRETSGGNTNSAEPIEIPPPRPKRKPVHPYPRKLVHPLRKGISVLEPPVRSVSPNFSASEQENQSPTSVLSAVGSETLGSTLSNTQNGSPSPVSSAAGVNPDRMFLPELNPPTEENASPSPVLTTSSSVPDEPLPMKFELFPQEIFAKECSVEEASTRTLKLFGRTVLVTDSHRPSSPTTSKSQPSDINNEGMHVETLPWNSTPTESSPENSSFSWSHLQPQPSGAFYYMHFQKEDSNCVEAGTTAPLPWWTFYGGIPIPFLPLHHQDSIKAHEDTKFAETHDKEIQKEGSWTGSNTGSVNEGGNCDTNWDVETQSHQPYLDTMEKESDSAFELKLSERSAFSRGRTNTDKCVKGFMPYKRCLAERDTQSSIIIGNEREEQRIRLCL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0837 495 MobiDBLite consensus disorder prediction 221 239 - -
Vvi4g0837 495 SMART sant 59 107 IPR001005 -
Vvi4g0837 495 MobiDBLite consensus disorder prediction 186 240 - -
Vvi4g0837 495 Gene3D - 62 109 - -
Vvi4g0837 495 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Vvi4g0837 495 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vvi4g0837 495 MobiDBLite consensus disorder prediction 279 324 - -
Vvi4g0837 495 PANTHER SWI/SNF COMPLEX-RELATED 44 430 - -
Vvi4g0837 495 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Vvi4g0837 495 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Vvi4g0837 495 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Vvi4g0837 495 CDD SANT 62 105 IPR001005 -
Vvi4g0837 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vvi4g0837 495 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Vvi4g0837 495 MobiDBLite consensus disorder prediction 186 204 - -
Vvi4g0837 495 MobiDBLite consensus disorder prediction 111 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0837 Vvi-Chr4 10885537 10888669 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi4g0837 Myb_DNA-binding 3.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0837 - - vvi:100263252 959.903