Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0833 ATGCTTGTTCCGGAGTGCAAACGAACTATAACTCAGATCCTTAATGCATTGTTGTCTGAGAAAGGTACTGATGCCAGTGTGCTTCTATGCATACTTGATATAGTAAAGGGCTGGATCGAAGATGTCTTCAACAAGCCTGGAATTTCAAGTGTCTCAAGTGGGTTTCTCACTTCAAGGGAAATAGTCTCCTTTCTTCAGAAGCTTTCACAAGTTGAAAAGCAGAACTTCTCTCCAGGTGCTTTAGAAGAGTGGGACCAGAAATATCTTCAGTCTCTTTATGGAATTTGTGCTGATTTGAATAAATATCCTCTATTATTTGATTGGACTGTGGATAAGATCAATAATTTTATTGGGCAAGATCCTGATTCAAAAGTTTTAATTGAGGTTCTGGATATTTATGGATTTGAGAGTTTCAAGACAAGCAGTTTTGAGCAATTTTGTATCAATTTGGCAAAGGAGAAACTGCAGCAACATTTCAATCAGCATGTATTCAAGATGGAACAAGAAGAATATACAAAAGAAGAAGTTGACTGGAGTTATATAGATTATATTCTTGATCTCATTGAAAAGAAACCTGGTGACATCATTGCTCTTCTGGATGAGGCATGTATATTTTCAAGCAAGCCAAAGTTGTCACCTACTGATTTCACCATTTATCACTATGCTGGTGACGTCACATATCAAACCGAGCACTTCCTGGATAAAAACAAATATTATGTTGTTGCTGAGGATCAATCACTTTTGAGTGCTTCCAGGTGCTCCTTAGTGGCAGACTTGTTCCCACCTTTACCAGAGGAGTCTTCCAAGTTCTCATCGATAGGTTCTCGGCTTAAGCAACAATTGCAATCTTTGCTTGAAACACTGAATGCCACTGAGCCACATTCTGTTTGCTATGTGAAGCCAAATAGTCCTTTTAAGCCATCAATATTTGAGAATAATAATGTTCTACAGCAACCACGTTGTGGGGGTGCCTTGAAAGTAATTAGGATCAGTGTCTACAAGCGATTGATCCTCAGTGACCAGATATTCAACGCCAATCATTTTCCTCATCAAGTTATCTTCAATTTCCTGTTCCAGGCGCGCCTCTTCACAGGCCACCAGTATTTCACGTATAGGAGCCTGCATCCATCAGCTCCAGACCGTCTTCATATGTTCCAGATGATCGTCTACCTTTTGCTGTTAGAGAAAGAATTGCAGTTAGAGATTCAAATGATGGAAAGAAGAGGCTGCAGGTAA 1236 0.3956 MLVPECKRTITQILNALLSEKGTDASVLLCILDIVKGWIEDVFNKPGISSVSSGFLTSREIVSFLQKLSQVEKQNFSPGALEEWDQKYLQSLYGICADLNKYPLLFDWTVDKINNFIGQDPDSKVLIEVLDIYGFESFKTSSFEQFCINLAKEKLQQHFNQHVFKMEQEEYTKEEVDWSYIDYILDLIEKKPGDIIALLDEACIFSSKPKLSPTDFTIYHYAGDVTYQTEHFLDKNKYYVVAEDQSLLSASRCSLVADLFPPLPEESSKFSSIGSRLKQQLQSLLETLNATEPHSVCYVKPNSPFKPSIFENNNVLQQPRCGGALKVIRISVYKRLILSDQIFNANHFPHQVIFNFLFQARLFTGHQYFTYRSLHPSAPDRLHMFQMIVYLLLLEKELQLEIQMMERRGCR* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0833 411 Gene3D Myosin VI head, motor domain, U50 subdomain 239 269 - -
Vvi4g0833 411 Gene3D Myosin VI head, motor domain, U50 subdomain 102 119 - -
Vvi4g0833 411 Gene3D Kinesin motor domain 292 330 IPR036961 -
Vvi4g0833 411 Gene3D Kinesin motor domain 120 135 IPR036961 -
Vvi4g0833 411 PANTHER MYOSIN 102 331 - -
Vvi4g0833 411 SMART MYSc_2a 1 400 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0833 411 ProSiteProfiles Myosin motor domain profile. 1 331 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0833 411 Pfam Myosin head (motor domain) 101 207 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0833 411 Pfam Myosin head (motor domain) 210 331 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0833 411 Gene3D - 136 207 - -
Vvi4g0833 411 Gene3D - 208 291 - -
Vvi4g0833 411 PRINTS Myosin heavy chain signature 126 154 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0833 411 PRINTS Myosin heavy chain signature 174 202 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g0833 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 333 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0833 Vvi-Chr4 10810964 10812603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0833 102 331 Myosins gene family AT2G31900 66.023 5.28e-109 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0833 K10357 - vvi:100259730 384.03