Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0827 ATGGGTGAAGAATCCTTAGCTACAGTTCCATTTGACAGAGCTGTTGAACAGGCGATTGTGACTTTGAAAAAGGGTGCTTATCTTTTGAGGTGTGGACGGAGAGGGAAGCCGAAGTTCTGCCCTTTTAGGCTATCTACGGATGAGAAGTTTTTGATTTGGTATTCCGGACAGGAGGAAAAACAATTGAGATTGAGCTCAATTACAAAGATTATACCTGGGCAAAGAACTGTAAATTTTCAGAGGCAGCTTCAAGAAGAAAGGGAGTGTCGGTCCTTTTCACTTGTCTATGCTAACGGCGAACGGTCACTTGATCTGATATGCAAGGACAAAGCACAGGCCGATTCTTGGTTTTTAGGCTTGAAAGCTGTGATATCCAGATGCCAACATCCTAGACAATTGAGCACATTCAGAAACTGCGTAGGCGTACAAACTTGTTTCAATAGCCCAGCAGGTTATTTTCGAAGAAAGCATAATCTAGGACTTCTAGAGGATACACCGAAGTTTAGTCAGGTACGCAGCTTATGTGGAAGCCCTACACAGTCACTTTCAGAGAGGTGTTTTTCTGATGGCTTATCGTATTCTGCTGATAGCTTTTATTCATCAGAATCGAGTGTATCGAATGTGAAAAATGTAGTGGATGTCTCACTTCCAAGTTCTCCTTATGTTGAACCAGATCATCTCAAACAGGGGGAAGAAATCTATGCTGGCACAGAAATTCAAACAGATATGCTGAGTCAGGTTGCTGCACCTTCTCATGCATCACCACAAATGGAAAAGAATGATATTTTGAGGGATGTCATGATATGGGGAGAAGGAATAGAAGGAGGGATCTTAGGAGGTGGGGTCTATAGGTTTGGTAACCAAAATGGGATGCAATCGGATGCTTTGCTTCCCAAGTTACTAGAATCCACCACAATGTTAGATGTGCGAGAAATATCTTTAGGGGGGAAGCATGCTGCCCTAGTTACCAAACATGGGGAAGTCTTTTGCTGGGGTGAGGGGAGTGGGGGAAGGCTTGGGCATAAAGTTAACATGGATATGGGCAACCCAAAAATTGTTGAATCCCTTACTGGTGTCCTTGTAAAATCAGTTTCCTGTGGGGAATATCAAACGTGTGCTCTGACGCATTCTGGTGAACTCTATACATGGGGTGACAATGGTTCTGGTATAGATTTAGTGGGTGAGAGGAGAAAGAGAAGTCAGTGGATACCAAGTCGGCTTTCTGGTCCTTTGAATGGTACAAGTATATCAAATGTTGCTTGTGGGGAATGGCATATGGCAATTGTGTCCACTTCTGGACAATTATTTACCTATGGAGATGGAACTTTTGGGGTTCTTGGGCATGGAAAGCTTGAAAGCATTTCTCAACCGAAAGAAGTTGAGTCTCTCAGTGGTTTATGGGTTAAAGCTGCTGCATGTGGACCATGGCATACAGCCGCTATTGTGGAAGTCAGGGCTGACCGCCTGAAGTTCAACACTAAAGGTGGGAAGTTGTTTACATGGGGTGATGGGGATAAAGGAAGACTTGGGCATGGTGATCAAGAGAGGAAGCTTTTACCAACATGTGTTGCACAACTTGTGGATCATGATTTTGTTCAGGTTTCTTGTGGGAGAATGTTGACTGTCGGACTTACATGTTTGGGGACAGTTTACACAATGGGAAGATTAGGTGATACTGAAGATAGGAACTCCCCAGCTGTAGTGGAGGAGTTGAGATATAGACAAGTAGAAAGTATTGCTTGTGGATCAGGTTTTACTGCTGCAATCTGTTTACACAAGTCTATATCTAGCACTGACCAATCAGCTTGTAGTGGATGTAGAATGGCTTTTGGGTTTACAAGGAAGAAGCATAATTGTTATAATTGTGGTCTTCTATTCTGTCGTGCATGTAGTAATAAGAAGGTTCTAAATGCATCTCTAGCGCCTAATAAAAAAAAGCCTTTTCGAGTTTGTGATCCATGCTACACCTATCTGCAAAGGATTAAACATTCAAGTAGACTATTGAAGCTGGAAAATCATAGTCCAAGACAGCTATTGATGACACAAAAGACGTCGTTCGATGAGAAAGAGGACAGGGGGGAAGGAACTCCTGCACGGACTCAATTTTCATCGGTTGGACAGCCCTGTAATGAGGCAAGCCAATCCTATGAAAAGAAACCATTCAAAAACCAAGTGGAAAACCAGCAGACTGTAGAACCAGTTTCTTCTTTGTCAAATGGACTGCCTAGATGGGGTCAAGTTCCATGCCCTTTTCTATTTGAAAAATATTGTAGAGAAAATTCTATAGCATTGAAAGATTTTCCAGACACAGATAAGATTCTCATAGAAGAAGTTGAGAGGCTGAGATCTGAGGCTAGGAGCCTAGAAAAGCTATGTCAAATGAGAAGTGAGAAGATTCAAGAATGTCAACAAAAATTACAAGAAACATGGTCTCTAGCAAGGGAGGAAGCTGCTAAGTGTAAAGCAGCAAAGGAGGTTATAAAAGCTTTATCATCAAGGCTTCATACGATGTCAGAGAAACTTTCTTCTGAAAGAGATGCAAAGGATGGAATTGATTCAAAGCTGCCTCAAATCATTACAAGATATGTAGATACTCCGAAAGAGAGACAGCTAGATAGTCTGTGTGGCTCTCCAATTGTGTTCTCTAATTCCCTGAGATCTATGTATGGGAGAGATGAGTGTCAAGGCCATACTAGATCAGTAGAGGATTCATGCCTCGAGAAAATAGATCCTAGACAGAATGGAACTAAGCCATCCAAGCTTGAATGGGTGGAGCAGTATGAACCTGGCGTATATATCACATTCATAACTTTAGCAAGTGGGCAAAGAGGCCTCAAGCGGGTGAGATTCAGCCGCAAACGATTTACTGAGAAGGAAGCAGAGCGATGGTGGGAAGAGAATCAAATAGGAGTATATCAAAATTATGGGATTGAAGGATACATAAGCTCCAGCCAAAATAAGATGAAGGAATCTACATGGTTGTGCTCCTCAATAAAATCAAGAGCTCAGTATATTTGA 3018 0.4218 MGEESLATVPFDRAVEQAIVTLKKGAYLLRCGRRGKPKFCPFRLSTDEKFLIWYSGQEEKQLRLSSITKIIPGQRTVNFQRQLQEERECRSFSLVYANGERSLDLICKDKAQADSWFLGLKAVISRCQHPRQLSTFRNCVGVQTCFNSPAGYFRRKHNLGLLEDTPKFSQVRSLCGSPTQSLSERCFSDGLSYSADSFYSSESSVSNVKNVVDVSLPSSPYVEPDHLKQGEEIYAGTEIQTDMLSQVAAPSHASPQMEKNDILRDVMIWGEGIEGGILGGGVYRFGNQNGMQSDALLPKLLESTTMLDVREISLGGKHAALVTKHGEVFCWGEGSGGRLGHKVNMDMGNPKIVESLTGVLVKSVSCGEYQTCALTHSGELYTWGDNGSGIDLVGERRKRSQWIPSRLSGPLNGTSISNVACGEWHMAIVSTSGQLFTYGDGTFGVLGHGKLESISQPKEVESLSGLWVKAAACGPWHTAAIVEVRADRLKFNTKGGKLFTWGDGDKGRLGHGDQERKLLPTCVAQLVDHDFVQVSCGRMLTVGLTCLGTVYTMGRLGDTEDRNSPAVVEELRYRQVESIACGSGFTAAICLHKSISSTDQSACSGCRMAFGFTRKKHNCYNCGLLFCRACSNKKVLNASLAPNKKKPFRVCDPCYTYLQRIKHSSRLLKLENHSPRQLLMTQKTSFDEKEDRGEGTPARTQFSSVGQPCNEASQSYEKKPFKNQVENQQTVEPVSSLSNGLPRWGQVPCPFLFEKYCRENSIALKDFPDTDKILIEEVERLRSEARSLEKLCQMRSEKIQECQQKLQETWSLAREEAAKCKAAKEVIKALSSRLHTMSEKLSSERDAKDGIDSKLPQIITRYVDTPKERQLDSLCGSPIVFSNSLRSMYGRDECQGHTRSVEDSCLEKIDPRQNGTKPSKLEWVEQYEPGVYITFITLASGQRGLKRVRFSRKRFTEKEAERWWEENQIGVYQNYGIEGYISSSQNKMKESTWLCSSIKSRAQYI* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0827 1005 Pfam Transcription factor BRX N-terminal domain 815 844 IPR027988 -
Vvi4g0827 1005 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 555 - -
Vvi4g0827 1005 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 597 659 IPR017455 -
Vvi4g0827 1005 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 432 IPR000408 -
Vvi4g0827 1005 Pfam Transcription factor regulating root and shoot growth via Pin3 922 975 IPR013591 -
Vvi4g0827 1005 CDD PH_PLC_plant-like 13 125 - -
Vvi4g0827 1005 MobiDBLite consensus disorder prediction 681 711 - -
Vvi4g0827 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 660 IPR013083 -
Vvi4g0827 1005 Gene3D - 393 604 IPR009091 -
Vvi4g0827 1005 Coils Coil 771 791 - -
Vvi4g0827 1005 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Vvi4g0827 1005 Gene3D - 14 132 IPR011993 -
Vvi4g0827 1005 ProSiteProfiles BRX domain profile. 921 976 IPR013591 -
Vvi4g0827 1005 MobiDBLite consensus disorder prediction 697 711 - -
Vvi4g0827 1005 SUPERFAMILY RCC1/BLIP-II 266 593 IPR009091 -
Vvi4g0827 1005 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 377 IPR000408 -
Vvi4g0827 1005 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 484 IPR000408 -
Vvi4g0827 1005 Gene3D - 226 392 IPR009091 -
Vvi4g0827 1005 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 496 547 IPR000408 -
Vvi4g0827 1005 SUPERFAMILY FYVE/PHD zinc finger 596 670 IPR011011 -
Vvi4g0827 1005 PRINTS Chromosome condensation regulator RCC1 signature 419 435 IPR000408 -
Vvi4g0827 1005 PRINTS Chromosome condensation regulator RCC1 signature 537 555 IPR000408 -
Vvi4g0827 1005 PRINTS Chromosome condensation regulator RCC1 signature 328 344 IPR000408 -
Vvi4g0827 1005 PRINTS Chromosome condensation regulator RCC1 signature 435 449 IPR000408 -
Vvi4g0827 1005 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Vvi4g0827 1005 PRINTS Chromosome condensation regulator RCC1 signature 309 322 IPR000408 -
Vvi4g0827 1005 Pfam Regulator of chromosome condensation (RCC1) repeat 361 389 - -
Vvi4g0827 1005 SMART fyve_4 591 660 IPR000306 GO:0046872
Vvi4g0827 1005 Pfam Regulator of chromosome condensation (RCC1) repeat 496 542 IPR000408 -
Vvi4g0827 1005 Pfam Regulator of chromosome condensation (RCC1) repeat 432 481 IPR000408 -
Vvi4g0827 1005 Pfam FYVE zinc finger 598 659 IPR000306 GO:0046872
Vvi4g0827 1005 SUPERFAMILY PH domain-like 14 124 - -
Vvi4g0827 1005 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 325 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0827 Vvi-Chr4 10683930 10694055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0827 922 980 Major Intrinsic Protein MIP AT1G31880 45.763 1.60e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0827 - - vvi:100253065 1859.34