Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0826 ATGGCTCCTGTTTCATTGCCTCCCGGTTTTCGCTTCCATCCAACTGATGAAGAACTTGTCGCATATTATCTCAAGAGAAAGATCAATGGCAGAAAGATTGAACTGGAGATCATCCCCGAGGTTGATCTCTACAAGTGCGAGCCATGGGACTTACCTGGAAAATCATTACTACCAAGCAAAGATCTTGAGTGGTATTTCTTTAGTCCCCGAGATCGGAAGTACCCCAATGGATCAAGGACCAACCGTGCTACTAAAGCGGGATATTGGAAGGCTACAGGCAAGGATCGGAAAGTGAACTCCCAGAGGCGTGCTGTGGGCATGAAGAAAACCTTAGTTTACTACCGAGGGAGAGCTCCGCATGGTGCTAGAACTGATTGGGTTATGCATGAATATCGGCTAGATGAGAGAGAATGTGAAATTGTCTCAGGCTTACAGGACGCTTATGCTCTGTGCCGTGTGTTCAAGAAGACTGCAAGTGGCCCTAAGATTGGAGAGCATTATGCTACCACAACTACCAACCAAATGTCTAGTGATCACTCATCTAGCATGGAACTGTATTCTGAGGGAAGATGTGAAGATTTGGAGAGCTCTGATTACCCAATCTCATTAGACACATGTTCACCCAGTCTCATGAATGGACCCTCAGCCGATATCAATGCAACAAGAGATGGGAAGTGGATGCAGTTCTTATCAGATGAAGCATTCTACTTTCCTACGCCATCACTGCCAAATTATGGAACCATGTCATACCCTCCATCGAAGGTGGACGTAGCATTGGAGTGTGCAAGGTTGCAGCATCGATTCTCACTGCCTCCCTTAGAGGTGGAAGACTTCCCCCAAGTTGGAGTCACCAATTTTAAAGCTCCCCAACCAGCTTCCATTTGTGGAAGCACAGAAGCAGACATTTTGCAGGAAATTCTTTCAGTTGCTCATGCTTCTCAGGAACTAATAAATCAATCCAGCGTCCCAAATCTTTGGGATGAAAATTATGCTGCCGATGATGATTTTACATTTATGACGGGCAAGGAAACTTATTACAATCAATTTAACAACATGAATTCTTTGAGACTTATAGACAAATCATGGGAACATCAAAATACTAGCTCTATAGAGATCGGGCATCTGGATGAAGATTTCAAGACTTCTGAGAGGATGGTGGAGAACCTGAGATGGGTAGGAATGTCAAACAAAGATCTGAATGAGAACTTTATCGAGGAACACAAGATTGTTCCAATAGAACATATTTCCAGTTTCCAAAGCAAGCTAGAGCATGAGGCTCAAGGACAAACTGATAGTCGTGAAAACTTGAAGGAGCTCAACGATAGCGAGCTAAACGATTTCCCTCTTGGGTTCATAAATGATGATCCAAACGAGAACTTCATAGAAGATGGCAATGAAGACGATTTTTCCAATACTCAGTCCTTTGAAGTTTTCGAGAAAATTGAAGTCAACCACGGGATGTTTGTTTCAACTCGCCAGGTAGCTGAAACATTCTTTCACCAAATTGAGCCTTCACAAACAGTTAAGGTGCACCTAAACCCGGTGATTACCAATAACTTGTCAATAGAAAACTCTGGTACACAGATAAGATCCAAGAGTGGAAGTTCTTTCTTTAGGAAGTTCAAGGCTTTTGGAAGGGGAAAGTTCATTGGAATCACCAAATCCATAGAACCATGTAGGAACATAGCGAATACCATCACTGGTATAGTTGCATTTCTGTTGACATGTTGTGTTTATCTCGGGGAAAACCCGGAAGGTGAGAAGTTGATGGATTATTTCCCTGAAACTAGAGAGATGGTGAAACAAGGTGAGGAAGGTTGCTCTTTCAGTATCAGGACAGTGAAAATAGCTGGAAAAACCGAGTGCATTGACGAGAAGGAGAATGTTTGGTTCATTAAGATAAGAGGAAGCTTCATTTTCAGTGCGCTTTTGAAGAAGATGGGGCCTCTCCTCACCATTGCTTTGGCTCTTTGTAGCATTTGGGCTCACCATATTTTACCTTCTTGA 2007 0.43 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNSQRRAVGMKKTLVYYRGRAPHGARTDWVMHEYRLDERECEIVSGLQDAYALCRVFKKTASGPKIGEHYATTTTNQMSSDHSSSMELYSEGRCEDLESSDYPISLDTCSPSLMNGPSADINATRDGKWMQFLSDEAFYFPTPSLPNYGTMSYPPSKVDVALECARLQHRFSLPPLEVEDFPQVGVTNFKAPQPASICGSTEADILQEILSVAHASQELINQSSVPNLWDENYAADDDFTFMTGKETYYNQFNNMNSLRLIDKSWEHQNTSSIEIGHLDEDFKTSERMVENLRWVGMSNKDLNENFIEEHKIVPIEHISSFQSKLEHEAQGQTDSRENLKELNDSELNDFPLGFINDDPNENFIEDGNEDDFSNTQSFEVFEKIEVNHGMFVSTRQVAETFFHQIEPSQTVKVHLNPVITNNLSIENSGTQIRSKSGSSFFRKFKAFGRGKFIGITKSIEPCRNIANTITGIVAFLLTCCVYLGENPEGEKLMDYFPETREMVKQGEEGCSFSIRTVKIAGKTECIDEKENVWFIKIRGSFIFSALLKKMGPLLTIALALCSIWAHHILPS* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0826 668 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Vvi4g0826 668 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vvi4g0826 668 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 209 - -
Vvi4g0826 668 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vvi4g0826 668 FunFam Nac domain-containing protein 86 15 159 - -
Vvi4g0826 668 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0826 Vvi-Chr4 10642874 10646805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0826 1 660 NAC Transcription Factor Family AT1G65910 45.588 3.91e-172 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi4g0826 NAM 9.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0826 - - vvi:100258199 1346.64